DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar1 and Ir21a

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster


Alignment Length:1010 Identity:191/1010 - (18%)
Similarity:337/1010 - (33%) Gaps:360/1010 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 FGLAIVLLVAPIDAAQRHTASDNPSTYNIGGVLSNSDSEEHFSTTIKHLNFDQQYVPRKVTYYDK 77
            :.:|:||..|              ..::|.|..|.|..|:..|.             |.:.:|..
  Fly     4 YWVALVLFTA--------------QAFSIEGDRSASYQEKCISR-------------RLINHYQL 41

  Fly    78 TIRMDKNPIKTVFNV--CDKLIEN------RVYAVVVSHEQTSGDLSPAAVSYTSGFYSI----P 130
            .        |.:|.|  ||...||      |:......:.:..|:|  .|..:....|:.    .
  Fly    42 N--------KEIFGVGMCDGNNENEFRQKRRIVPTFQGNPRPRGEL--LASKFHVNSYNFEQTNS 96

  Fly   131 VIGISSRDAAFSDKNIHVSFLRTVPP--YYHQADVWLEMLSHFAYTKVIIIHSSDTDGRAILGRF 193
            ::|:.::        |...:|...||  ||   |.::|                .:||..:...|
  Fly    97 LVGLVNK--------IAQEYLNKCPPVIYY---DSFVE----------------KSDGLILENLF 134

  Fly   194 QTTSQTYYDDVDVRATVELIVEFEPKLESFTEHLIDMKTAQSRVYLMYASTEDAQVIFRDAGEYN 258
            :|...|:|..       |:..::|.|.:.||.|:    ....:.|:::.|..             
  Fly   135 KTIPITFYHG-------EINADYEAKNKRFTSHI----DCNCKSYILFLSDP------------- 175

  Fly   259 MTGEGHVWIVTEQALFSNNTPDGVLGLQLEH-----AHSDKGHIRD--SVYVLASAIKEMISNET 316
                    ::|.:          :||.|.|.     :.|.:..:||  |..:.::.:..::..|:
  Fly   176 --------LMTRK----------ILGPQTESRVVLVSRSTQWRLRDFLSSELSSNIVNLLVIGES 222

  Fly   317 IAEAPKDCGDSAVNWESGKRLFQYLKSRNITGETGQVAFDDNGDRIYAGYDVINIREQQKKHVVG 381
            :...|                   ::.|.....|.::..|..|.         |........:.|
  Fly   223 LMADP-------------------MRERPYVLYTHKLYADGLGS---------NTPVVLTSWIKG 259

  Fly   382 KFSYDSMRAKMRMRINDSEIIWPGKQRRKPEGIMIPTHLRLLTIEEKPFVYVRRMGDD------- 439
            ..|        |..||    ::|.|.:....|    ...::....:.||::..|..|.       
  Fly   260 ALS--------RPHIN----LFPSKFQFGFAG----HRFQISAANQPPFIFRIRTLDSSGMGQLR 308

  Fly   440 ----EFRCEPDERPCPLFNNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILR 500
                |||                             ||..:|||:||:.|:..:|        .|
  Fly   309 WDGVEFR-----------------------------LLTMISKRLNFSIDITETP--------TR 336

  Fly   501 NNT-GAMTLRKEWTGLIGELVNERADMIVAPLTINPER--------------AEYIEF-SKPF-K 548
            :|| |.:...:|      :::....|:.::.:.|..||              |.:|.. ||.. |
  Fly   337 SNTRGVVDTIQE------QIIERTVDIGMSGIYITQERLMDSAMSVGHSPDCAAFITLASKALPK 395

  Fly   549 YQGITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPF---GRFKLSHSDS 610
            |:.|                :.||...:|         |||:...|....|.   .|..|||...
  Fly   396 YRAI----------------MGPFQWPVW---------VALICVYLGGIFPIVFTDRLTLSHLMG 435

  Fly   611 NEEKALNLSSAVWFAWGVLLNSGIGEG-----TPRSFSARVL-GMVWAGFAMIIVASYTANLAAF 669
            |..:..|:   .|:.:|:..|:....|     ..|..|.|:| |..|. |.:||.:.||.::.||
  Fly   436 NWGEVENM---FWYVFGMFTNAFSFTGKYSWSNTRKNSTRLLIGAYWL-FTIIITSCYTGSIIAF 496

  Fly   670 LVLER-PKT------------KLSGINDARLRNTMENLTCATVKGSSVDMYFRRQVELSNMYRTM 721
            :.|.. |.|            ::..:|:.......:|.|               .:..|.:|:.|
  Fly   497 VTLPAFPDTVDSVLDLLGLFFRVGTLNNGGWETWFQNST---------------HIPTSRLYKKM 546

  Fly   722 EANNYATAEQAIQDVKKGKL--MAFIWDSSRLEY---------EASKDCELVTAGELFGRSGYGI 775
            |.  ..:.::.|.:|.:...  .||:...::|||         ..|:...|..:.|.|.....|.
  Fly   547 EF--VGSVDEGIGNVTQSFFWNYAFLGSKAQLEYLVQSNFSDENISRRSALHLSEECFALFQIGF 609

  Fly   776 GLQKGSPWTDAVTLAILEFHESGFMEKLDKQ--WIFH----GHVQQNC------ELFEKTPNTLG 828
            ...:.|.:...:...||...:||.:.|::.:  |:..    |.:.|..      |:.:: ...|.
  Fly   610 LFPRESVYKIKIDSMILLAQQSGLIAKINNEVSWVMQRSSSGRLLQASSSNSLREIIQE-ERQLT 673

  Fly   829 LKNMAGVFILVGVGIAGGVGLIIIEVI----YKKHQVKKQKRLDIARHAADKW----RGTI---- 881
            ..:..|:|:|:.:|...|...::.|::    .|..|:.|:.|    :.||..|    .|::    
  Fly   674 TADTEGMFLLMALGYFLGATALVSEIVGGITNKCRQIIKRSR----KSAASSWSSASSGSMLRTN 734

  Fly   882 ------EKRKTIR---ASLAMQRQYNV-GLNSTHA 906
                  :|||..|   |.:|.:..:.: .||.|.|
  Fly   735 AEQLSHDKRKANRREAAEVAQKMSFGMRELNLTRA 769

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 68/412 (17%)
ANF_receptor 58..371 CDD:279440 52/333 (16%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 94/473 (20%)
HisJ 451..>558 CDD:223904 25/123 (20%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 34/159 (21%)
Lig_chan 575..838 CDD:278489 64/307 (21%)
CaM_bdg_C0 854..882 CDD:287524 8/45 (18%)
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 80/382 (21%)
Lig_chan 407..662 CDD:278489 60/284 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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