DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar1 and Ir8a

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster


Alignment Length:674 Identity:173/674 - (25%)
Similarity:285/674 - (42%) Gaps:150/674 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   362 IYAGYDVINIREQQKKHVVGKFSYDSMRAKMRMRINDSEIIWPGKQRRKPEGIMIPTHLRLLTIE 426
            |.|||  .:...:.|..:....|...||..       :|.|.|.::           ..|:.|.|
  Fly   348 ISAGY--YSSEHEAKTDLAAWSSVGEMRLL-------NETISPARR-----------FFRIGTAE 392

  Fly   427 EKPFVYVRR-MGDDEFRCEPDERPCPLFNNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSP 490
            ..|:.|:|| .|..|.  ..|....|::            .|||||.:|.||:::||.:::....
  Fly   393 SIPWSYLRREEGTGEL--IRDRSGLPIW------------EGYCIDFIIRLSQKLNFEFEIVAPE 443

  Fly   491 DGQFGHYILRNNTGAMTLRKEWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQ-GITI 554
            .|..|..   |..|      ||.|::|:||....|..:|.|.:..||.|.|:|..|:..| ||:|
  Fly   444 VGHMGEL---NELG------EWDGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISI 499

  Fly   555 LEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLSHSDSNEEKA---- 615
            ..:||.|.::|..|:......:|:.::.::...|::::.:|::||:       |..|..:|    
  Fly   500 AIRKPVRRTSLFKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYSPY-------SSRNNRQAYPYA 557

  Fly   616 ---LNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKT 677
               ..|..:.|||.......|.|| .|::.|.|:|...:..|.::::|::||||||||.:||.:|
  Fly   558 CREFTLRESFWFALTSFTPQGGGE-APKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQT 621

  Fly   678 KLSGINDARLRNTMENLTCATVKGSSVDMYFRR----QVELSNMYRTMEAN-----------NYA 727
            .:..: :...|.:..|.|  .||.|....||..    :..|..|::.:..|           :|.
  Fly   622 PVQSL-EQLARQSRINYT--VVKDSDTHQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYP 683

  Fly   728 TAE------------QAIQDVKKGKL---------MAFIWDSSRLEYEASKDCELVTAGELFGRS 771
            ..|            |.:.|.|:|..         .|||.||:.::||.:::|.|...||:|...
  Fly   684 IKEQYGHILLAINSSQPVADAKEGFANVDAHENADYAFIHDSAEIKYEITRNCNLTEVGEVFAEQ 748

  Fly   772 GYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIFHGHVQQNCELFEKTPNTLGLKNMAGVF 836
            .|.:.:|:||...|.::.||||..:..|.|:|..::....:: .||.|.|.... :.|:::.|||
  Fly   749 PYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSNL-PNCPLSEDQEG-ITLESLGGVF 811

  Fly   837 ILVGVGIAGGVGLIIIEVIYKKHQVKKQKRLDIARHAADKWRGTIEKRKTIRASLAMQRQYNVGL 901
            |....|:...:..:.:||:|.|   |||..|:|.:               :|   .:......|.
  Fly   812 IATLFGLVLAMMTLGMEVLYYK---KKQNALEITQ---------------VR---PVNDSSGSGG 855

  Fly   902 NSTHAPGTISLAVDKRRYPRLGQRLGPERAW--PGDAADVLRIRRPYELGNPGQSPKVMAANQPG 964
            ||:.||.|.:...              ::||  |...|:    .:|.::..|   |....|...|
  Fly   856 NSSTAPPTATSTT--------------KQAWHIPVLEAE----EKPAKVSPP---PSFETATFRG 899

  Fly   965 MPMPML-----GKTRPQQSVLPPR 983
            ..:|..     ||.:|:..:...|
  Fly   900 KKLPARITLGDGKFKPRHGLYARR 923

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 10/42 (24%)
ANF_receptor 58..371 CDD:279440 4/8 (50%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 123/445 (28%)
HisJ 451..>558 CDD:223904 34/107 (32%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 40/142 (28%)
Lig_chan 575..838 CDD:278489 81/305 (27%)
CaM_bdg_C0 854..882 CDD:287524 8/27 (30%)
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 122/447 (27%)
Lig_chan 520..818 CDD:278489 82/310 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
55.010

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