Sequence 1: | NP_730940.1 | Gene: | Nmdar1 / 40665 | FlyBaseID: | FBgn0010399 | Length: | 997 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_036705.3 | Gene: | Grin2a / 24409 | RGDID: | 2737 | Length: | 1464 | Species: | Rattus norvegicus |
Alignment Length: | 1137 | Identity: | 300/1137 - (26%) |
---|---|---|---|
Similarity: | 495/1137 - (43%) | Gaps: | 248/1137 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 19 LLVAPI-----DAAQRHTASDNPSTYNIGGVLSNSDSEEHFSTTIKHLNFDQQYVPRKVTYYDKT 78
Fly 79 IRMDKNPIKTVFN----------VCDKLIENRVYAVVVSHEQTSGDLSPAAVSYTSGFYS----I 129
Fly 130 PVIGI-SSRDAAFSDKNIHVSFLRTVPPYYHQADVWLEMLSHFAYTKVIIIHSSDTDGRAILGRF 193
Fly 194 QTTSQTYYDDVDVRATVELIVEFEPKLESFTEHLIDMKTAQSRVYLMYASTEDAQVIFRDAGEYN 258
Fly 259 MTGEGHVWIVTEQALFSNNT-------PDGVLGLQLEH-AHSDKGHIRDSVYVLASAIKEMISN- 314
Fly 315 ETIAEAPKDCGDSAVNWESG-KRLFQYLKSRNITGETGQVAFDDNGDRIYAGYDVINIREQQKKH 378
Fly 379 VVGKFSYDSMRAKMRMRINDSEIIWPGKQRRKPEGIMIP--THLRLLTIEEKPFVYVRRMGDDEF 441
Fly 442 RCEPDERPCPLFNNSDATANE-----FCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILRN 501
Fly 502 NTGAMTLRKEWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQGITILEKKPSRSSTLV 566
Fly 567 S---FLQPFSNTLWILVMVSVHVV-ALVLYLLDRFSPFG------RFKLSHSDSNEEKALNLSSA 621
Fly 622 VWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDAR 686
Fly 687 LRNTME---NLTCATVKGSSVDMYFRRQVELSNMYRTMEANNYATAEQAIQDVKKGKLMAFIWDS 748
Fly 749 SRLEYEASKD--CELVT--AGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIF 809
Fly 810 HG--HVQQNCELFEKTPNTLGLKNMAGVFILVGVGIA--------------------GGV----- 847
Fly 848 GLI------IIEVIYKKHQVKKQK--------------------------------RLDIARHAA 874
Fly 875 D-KWRGTI--------------------------------------EKRKTIRASLAMQRQYNVG 900
Fly 901 LNSTHAPGTISLAV--DKRRYPRLGQRLGPERAWPGDAADVLRIRRPYELGNP-GQSPKVMAANQ 962
Fly 963 PGMPMPMLGKTRPQQSVLPPRYSPGYTSDVSH 994 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Nmdar1 | NP_730940.1 | PBP1_iGluR_NMDA_NR1 | 12..405 | CDD:107374 | 94/415 (23%) |
ANF_receptor | 58..371 | CDD:279440 | 75/337 (22%) | ||
PBP2_iGluR_NMDA_Nr1 | 417..818 | CDD:270437 | 154/426 (36%) | ||
HisJ | 451..>558 | CDD:223904 | 45/111 (41%) | ||
Periplasmic_Binding_Protein_Type_2 | <516..651 | CDD:304360 | 48/144 (33%) | ||
Lig_chan | 575..838 | CDD:278489 | 94/278 (34%) | ||
CaM_bdg_C0 | 854..882 | CDD:287524 | 10/98 (10%) | ||
Grin2a | NP_036705.3 | PBP1_iGluR_NMDA_NR2 | 32..392 | CDD:107373 | 86/395 (22%) |
PBP2_iGluR_NMDA_Nr2 | 403..802 | CDD:270436 | 151/419 (36%) | ||
HisJ | <458..>541 | CDD:223904 | 42/95 (44%) | ||
Glutamate binding. /evidence=ECO:0000269|PubMed:16281028, ECO:0007744|PDB:2A5S, ECO:0007744|PDB:2A5T, ECO:0007744|PDB:4NF4, ECO:0007744|PDB:4NF8, ECO:0007744|PDB:5I56, ECO:0007744|PDB:5I57, ECO:0007744|PDB:5I58, ECO:0007744|PDB:5I59, ECO:0007744|PDB:5JTY | 511..513 | 0/1 (0%) | |||
Lig_chan | 556..828 | CDD:278489 | 94/283 (33%) | ||
Pore-forming. /evidence=ECO:0000250|UniProtKB:B7ZSK1 | 599..620 | 5/20 (25%) |