DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar1 and glr-5

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:NP_505244.1 Gene:glr-5 / 179251 WormBaseID:WBGene00001616 Length:932 Species:Caenorhabditis elegans


Alignment Length:961 Identity:232/961 - (24%)
Similarity:401/961 - (41%) Gaps:224/961 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 HTASDNPSTYNIGGVLSNSDSEEHFSTTIKHLNFDQQYVPRKVTYYDKTIRMDKNPI----KTVF 90
            |..|.:...|.||.:....: :.|....::   :..:::.::..|.|..:.::...:    ..:.
 Worm    16 HVFSTSCIAYKIGAIFRERE-DAHIEAAVR---YSVEWLSQRGIYGDIDLVIEYIDVLDHYDAIK 76

  Fly    91 NVCDKLIENRVYAVV-VSH-------EQTSGDLSPAAVSYTSGFYSIPVIGISSRDAAFSDKNIH 147
            ..|..|.::.:.|:: .||       |:.:.||            .||.:      .|..|    
 Worm    77 KACKMLEKDHIVALLGGSHAALNAQLERITDDL------------DIPFL------TAIDD---- 119

  Fly   148 VSFLRTVPPYYHQADVW---------LEMLSHFAYTKVIIIHSSDTDGR---AILGRFQTTSQTY 200
               ||| .....:.|.|         ::|.:|:.:.::::::..|...|   .:|...:..|..:
 Worm   120 ---LRT-DMGKSKIDFWPRPQLFEAVVDMFTHWRWNRIVLVYEGDERIRRLEQLLESEEYASIRF 180

  Fly   201 Y----DDVDVRATVELIVEFE-------PKLESFTEHLIDMKTAQSRVYL--------------- 239
            |    .|.|.......:.|.|       .....|:..|:||....:..:|               
 Worm   181 YLIKVHDGDYMKAARQVKELEECRLLHKKDCSEFSRLLVDMNPEHTYTFLLASLQMGLIELKHWF 245

  Fly   240 ----MYASTEDAQVIFRDAGEYNMTGEGHVWIVTEQALFSNNTPDGVLGLQLEHAHSDKGHIR-- 298
                |..||.|.: :||    ||     |...::...:.|....:........|.   |.||.  
 Worm   246 LLTNMELSTMDME-LFR----YN-----HARFISPYPVDSTFLTENRDAFNFSHF---KEHITEK 297

  Fly   299 --------------------DSVYVLASAIKEMISNETIAEAPKD-CGDSAVN---WESGKRLFQ 339
                                |:||..|:...|:.|:..:.:.|:. |..|:.|   ::.|:.|..
 Worm   298 WAMKTDNSRNLKMMEAVFTFDAVYAFANVFNELSSHMQMNDVPQTLCRKSSRNSRKYQHGRSLID 362

  Fly   340 YLKSRNITGETGQVAFDDNGDRI------------YAG-YDVINIREQQKK-HVVGKFSYDSMRA 390
            .:...::.|.:|.:. ..||..:            |:| .|.|...|.... ||  ..|.|| :|
 Worm   363 NIVHNDLHGLSGDLR-RLNGHPLKSNFSMRIQLLGYSGRLDDIGFWEPATNVHV--NMSGDS-KA 423

  Fly   391 KMRMRINDSEIIWPGKQRRKPEGIMIPTHLRLLTIEEKPFVYVRRMGDDEFRCEPDERPCPLFNN 455
            :::..:..|:.:.|              |.|:.||.|:|:|.:::                  |:
 Worm   424 QLQRNVQVSDELKP--------------HFRVTTIMERPYVMLKK------------------NH 456

  Fly   456 SDATAN-EFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILRNNTGAMTLRKEWTGLIGEL 519
            .:..|| :|  .|:|||||.||||.:.|||.:....||::|:....|.:        |.|::||:
 Worm   457 YELDANSKF--EGFCIDLLAELSKDLGFTYTIHAVKDGKYGNDKYGNGS--------WDGMMGEI 511

  Fly   520 VNERADMIVAPLTINPERAEYIEFSKPFKYQGITILEKKP-SRSSTLVSFLQPFSNTLWILVMVS 583
            :...|:|.|||||:|..|:|.::|:|||...||:||.|.| .:...|.|||.|.|..:|..:..|
 Worm   512 LRGEAEMAVAPLTVNYRRSEAVDFTKPFLSLGISILYKVPDDQQPDLFSFLNPLSWQIWTAIATS 576

  Fly   584 VHVVALVLYLLDRFSPFGRFKLSHS-------------DSNEEKALNLS------SAVWFAWGVL 629
            :..|.|.:|.:...:|: .:.|:.|             .:|:|..:.:|      :.||:....:
 Worm   577 IITVTLGMYFVANVTPY-EWNLNFSCCTAHEPHPAAAFATNQEAPIVMSNNYSFWNTVWYVLSTM 640

  Fly   630 LNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTMENL 694
            |..|...| ||:.|.|:||..|..|.::|:::|||||||.|.:.||...:..::|...:.|   :
 Worm   641 LKGGCDFG-PRAVSTRLLGGTWWVFYLVIISAYTANLAAVLTVSRPYIPIKNLDDLANQTT---I 701

  Fly   695 TCATVKGSSVDMYFR--RQVELSNMYRTME------ANNYATAEQAIQDVKKGKLMAFIWDSSRL 751
            :..|::|.|...:|:  |......|::.|:      .:|....|:|:     ....|::.:|:.|
 Worm   702 SYGTIRGGSTMQFFQESRIAAHVKMWQYMKDKDVFVTSNGKGVERAL-----SMNYAYLMESTSL 761

  Fly   752 EYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFME-KLDKQWIFHGHV-Q 814
            |||..::|.|...|.:.|..||||.|.|.|.|||.::..||.:.:.|.:| |..|.|...|.. .
 Worm   762 EYETQQNCNLTQIGGVLGSKGYGIALAKKSEWTDRISRQILLYAKRGIIEMKKTKWWRSKGAACA 826

  Fly   815 QNCELFEKTPNTLGLKNMAGVFILVGVGIAGGVGLIIIEVIYKKHQVKKQK 865
            ......:.....|.:.|:||:||.:||||.....::|.|:|::.|.:.|::
 Worm   827 STASAVKHDRFALSMYNVAGLFITLGVGIVLAAIVVIFELIHRCHHIAKKE 877

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 83/468 (18%)
ANF_receptor 58..371 CDD:279440 69/405 (17%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 133/431 (31%)
HisJ 451..>558 CDD:223904 43/107 (40%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 50/154 (32%)
Lig_chan 575..838 CDD:278489 80/291 (27%)
CaM_bdg_C0 854..882 CDD:287524 3/12 (25%)
glr-5NP_505244.1 PBP1_iGluR_delta_like 26..418 CDD:107376 75/437 (17%)
ANF_receptor 38..377 CDD:279440 64/380 (17%)
PBP2_iGluR_Kainate 438..819 CDD:270432 131/418 (31%)
Lig_chan 568..855 CDD:278489 83/296 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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