DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nmdar1 and Grid1

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:NP_032192.2 Gene:Grid1 / 14803 MGIID:95812 Length:1009 Species:Mus musculus


Alignment Length:1058 Identity:243/1058 - (22%)
Similarity:442/1058 - (41%) Gaps:196/1058 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 STYNIGGVLSNSDSEEH--FSTTIKHLNFDQQYV-PRKVTYYDKTIRMDKNPIKTVFNVCDKLIE 98
            |..:||.:...:.:::.  |...:..|:.:...: ..|:||..|.|..: ||.:.|...|| |:.
Mouse    22 SIIHIGAIFEENAAKDDRVFQLAVSDLSLNDDILQSEKITYSIKVIEAN-NPFQAVQEACD-LMT 84

  Fly    99 NRVYAVVVSHEQTSGDLSPAAVSYTSGFYSIPVIGISSRDAAFSDKNIHVS--------FLRTVP 155
            ..:.|:|.|    :|..|..|:...:....||.:.:............|::        .|.:.|
Mouse    85 QGILALVTS----TGCASANALQSLTDAMHIPHLFVQRNPGGSPRTACHLNPSPDGEAYTLASRP 145

  Fly   156 PYYHQADVWLEMLSHFAYTKVIIIHSSDTDGRAILGRFQTTSQTYYDDVDVRATVELIVEFEPKL 220
            | ....||.|.:::...:.|.::.:.|:.|.|.:        |::.|... |..:::.::...|.
Mouse   146 P-VRLNDVMLRLVTELRWQKFVMFYDSEYDIRGL--------QSFLDQAS-RLGLDVSLQKVDKN 200

  Fly   221 ES--FTEHLIDMKTAQSRVY-------LMYASTEDAQVIFRDAGEYNMTGEGHVWIVTEQALFSN 276
            .|  ||.....|||.:...|       ::..|.:.|.....:|.|.|:..:...|:...:.:...
Mouse   201 ISHVFTSLFTTMKTEELNRYRDTLRRAILLLSPQGAHSFINEAVETNLASKDSHWVFVNEEISDP 265

  Fly   277 NTPD---GVLG------------------LQLEHAHS------DKGHIR----------DSVYVL 304
            ...|   ..||                  ::..|..|      .:|:::          |||.:|
Mouse   266 EILDLVHSALGRMTVVRQIFPSAKDNQKCMRNNHRISSLLCDPQEGYLQMLQISNLYLYDSVLML 330

  Fly   305 ASAI-KEMISNETIAEAPKDC-GDSAVNWESGKRLFQYLKSRNITGETGQVAFDDNGDRIYAGYD 367
            |:|. :::...:..:.|..:| ..|...|..|:.:...:|..:|||.||.:.|.::....|..::
Mouse   331 ANAFHRKLEDRKWHSMASLNCIRKSTKPWNGGRSMLDTIKKGHITGLTGVMEFREDSSNPYVQFE 395

  Fly   368 VINIREQQKKHVVGKFSYDSMRAKMRMRINDSEIIWPGKQRRKPEGIMIP-THLRLLTIEEKPFV 431
            ::.....:   ..||    .||   ::...|||....|..:.:|.|..:. ..|:::|:.|:|||
Mouse   396 ILGTTYSE---TFGK----DMR---KLATWDSEKGLNGSLQERPMGSRLQGLTLKVVTVLEEPFV 450

  Fly   432 YVRRMGDDEFRCEPDERPCPLFNNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGH 496
            .|.    :....:|..                 .:|:.||:|..|:|.:.|.|::..:|||::||
Mouse   451 MVA----ENILGQPKR-----------------YKGFSIDVLDALAKALGFKYEIYQAPDGRYGH 494

  Fly   497 YILRNNTGAMTLRKEWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQGITILEKKPSR 561
            .:  :||       .|.|:||||:::|||:.::.:||.|||...::|||.:....:.||.|||..
Mouse   495 QL--HNT-------SWNGMIGELISKRADLAISAITITPERESVVDFSKRYMDYSVGILIKKPEE 550

  Fly   562 SSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLSHSDSNEEKALNLSSAVWFAW 626
            ..::.|...||...:|..:..::.||.:::::|:|.....  ..|.:......:..|.||:|..:
Mouse   551 KISIFSLFAPFDFAVWACIAAAIPVVGVLIFVLNRIQAVR--SQSATQPRPSASATLHSAIWIVY 613

  Fly   627 GVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTM 691
            |..:..| ||.:..|.:.|::...|..|.:|:.:||||||||||.:.|....:....|  |...:
Mouse   614 GAFVQQG-GESSVNSVAMRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNPIRTFQD--LSKQL 675

  Fly   692 ENLTCATVKGSSVDMYFR--------RQVELSNMYRTMEANNYA-----TAEQAIQDVKKGKLMA 743
            | ::..||:.|:|..|||        :....:.::||:..|..|     ...:.|:..|||. .|
Mouse   676 E-MSYGTVRDSAVYEYFRAKGTNPLEQDSTFAELWRTISKNGGADNCVSNPSEGIRKAKKGN-YA 738

  Fly   744 FIWDSSRLEYEA--SKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQ 806
            |:||.:.:||.|  ..||.:...|......||||.||.|||:.|..:..|||..::|.::.|.::
Mouse   739 FLWDVAVVEYAALTDDDCSVTVIGNSISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQK 803

  Fly   807 WIFHGHVQQNCELFEKTP-----NTLGLKNMAGVFILVGVGIAGGVGLIIIEVIYKKHQVKKQKR 866
            |..|   ...|:|...:.     .:|.|.:.||||.::.:|:.....:..:|:.:..::..::  
Mouse   804 WWP
H---TGRCDLTSHSSTQTEGKSLKLHSFAGVFCILAIGLLLACLVAALELWWNSNRCHQE-- 863

  Fly   867 LDIARHAADKWRGTIEKRKTIRASLAMQRQYNVGLNS------TH---APGTISLAVDKRRYPRL 922
                         |.::.|.:......:|     :||      .|   :|.:|.|:..:......
Mouse   864 -------------TPKEDKEVNLEQVHRR-----INSLMDEDIAHKQISPASIELSALEMGGLAP 910

  Fly   923 GQRLGPERAWPGDAADVLRIRRPYELGNPGQSPKVMAANQPGMPMPM------------------ 969
            .|.|.|.|.:......|.....  |..:.|.|..:.:.....:|:|:                  
Mouse   911 SQALEPTREYQNTQLSVSTFLP--EQSSHGTSRTLSSGPSSNLPLPLSSSATMPSIQCKHRSPNG 973

  Fly   970 -LGKTRPQQSVLPPRYSP 986
             |.:..|.::.:|..:.|
Mouse   974 GLFRQSPVKTPIPMSFQP 991

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 84/426 (20%)
ANF_receptor 58..371 CDD:279440 73/369 (20%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 123/416 (30%)
HisJ 451..>558 CDD:223904 34/106 (32%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 39/134 (29%)
Lig_chan 575..838 CDD:278489 83/282 (29%)
CaM_bdg_C0 854..882 CDD:287524 1/27 (4%)
Grid1NP_032192.2 Interaction with CBLN1. /evidence=ECO:0000269|PubMed:27418511 21..436 87/439 (20%)
PBP1_iGluR_delta_1 25..423 CDD:107387 83/423 (20%)
PBP2_iGluR_delta_1 436..806 CDD:270448 122/406 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960 5/30 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.