DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nmdar1 and LOC1273165

DIOPT Version :10

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:XP_061503118.1 Gene:LOC1273165 / 1273165 VectorBaseID:AGAMI1_009742 Length:1024 Species:Anopheles gambiae


Alignment Length:196 Identity:47/196 - (23%)
Similarity:74/196 - (37%) Gaps:60/196 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   276 IGDLSAQMNAQIGDDEELDTVDIARRILSELKERCIP---QTALAEKILARSQGTLSDLLR-MPK 336
            :.||:|:..|             .|||     :.|:.   |..:||:|.|...|.....|. |.:
Mosquito   154 LDDLAARRGA-------------FRRI-----DTCMTLTFQQEVAERICAPVGGEQRCRLSVMSQ 200

  Fly   337 PWS--VMK---NGRATFQRMSNWLGLDPDVRRALCFLPKEDVARITGLDEPTPAKRKKT------ 390
            .|:  |||   .|:|                    |:||..|.  .|:.:..|.||.||      
Mosquito   201 VWTEPVMKFTIPGKA--------------------FVPKPQVD--VGVVKLIPLKRPKTQLPFHL 243

  Fly   391 -VKVIRLTFTETQLKSLQKSFQQNHRP--TREMRQKLSATLELDFSTVGNFFMNSRRRLRIDQQI 452
             .:|:|..|:..| |..::.:.....|  ..|:.:||....|:. .|:..|.:...:.||:.:..
Mosquito   244 VERVVRHIFSMRQ-KYCRRGYGTLLPPEDREEVAEKLFQRAEVQ-DTLRPFELTVEQCLRLAEVY 306

  Fly   453 S 453
            |
Mosquito   307 S 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 37..405 CDD:380602 36/144 (25%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 9/37 (24%)
CaM_bdg_C0 854..882 CDD:402271
LOC1273165XP_061503118.1 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.