DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar1 and grin3b

DIOPT Version :10

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:XP_017952374.2 Gene:grin3b / 100497172 XenbaseID:XB-GENE-990106 Length:1005 Species:Xenopus tropicalis


Alignment Length:372 Identity:66/372 - (17%)
Similarity:125/372 - (33%) Gaps:74/372 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 SVVLEDHTAESTMEPGVSATVTEQLEEKSDKSSDGDGTSKR---------LTRSLKSVENETEED 137
            |..|:.......:.||.|..:|..::       .||..:..         :.::|.:.|.|..:.
 Frog  1386 SQTLQVSPLSGVVRPGESTNITVTIQ-------TGDQAAFYILDLVCEIFMEKTLATYEQELAKW 1443

  Fly   138 HEEKEDEAPQ----SSRRESTRLKRKLLESQKTVQTTGNSSRASSKSQEKEVPGTKSQCAPKIRT 198
            .||:|.::.:    .::..|:...:.:|.|...|:...|......:..:...|...::..|...:
 Frog  1444 EEEEERQSVEFTVGDTKMPSSAASKNILPSSGFVEVKANQRLPEIQRYKTLPPIRNAEVIPPPAS 1508

  Fly   199 TPEQSKAATKRQSSTTVRAS---------STCGSS-----------------------VSSTSTV 231
            ...:|:.|.|.......|..         |..|.|                       :......
 Frog  1509 RDRKSRRAEKEAQRFWARPEPPAPLQLHVSVTGRSHYIPDFLNQFQNDFQRHFQHRLPIKQAEGP 1573

  Fly   232 SSPDYTAKKGRATETPKLEELAPKKQSSATPKPGGEV-CVWDGVQIGDLSAQMN-------AQIG 288
            :..|...:.|.:...||  :|.|:.|..||......: .:.:.....:..||..       :|:|
 Frog  1574 AYMDLQPETGESEVKPK--KLPPETQEMATDIMASIIRSLLEDKHFHEELAQTRKDPLPYFSQLG 1636

  Fly   289 DDEELDTVDIARRILSELKERCIPQTALAEKILARSQGTLSDLLRMPKPWSVMKNGRATFQRMSN 353
            ....|..::...|.:..:....:|.|:|..:.....:||.::....||..|:::     :||  |
 Frog  1637 GQGNLPGMEKIPRNVELMPSEGMPATSLISQEEQEEEGTATNSPIAPKEGSLIE-----YQR--N 1694

  Fly   354 WLGLDPDVRRALCFLPK-----EDVARITGLDEPTPAKRKKTVKVIR 395
            ...||.:::......|.     |.|...|.|:..|.|.|.:.|...|
 Frog  1695 QSKLDEELKEKAKRTPAFSHLVESVLENTLLNILTEANRGEVVLTTR 1741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 37..405 CDD:380602 66/372 (18%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437
CaM_bdg_C0 854..882 CDD:402271
grin3bXP_017952374.2 PBP1_iGluR_NMDA_NR3 29..402 CDD:380600
PBP2_iGluR_NMDA_Nr3 418..814 CDD:270438
Lig_chan 580..847 CDD:459656
Blue background indicates that the domain is not in the aligned region.

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