DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nmdar1 and grin2b

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:881 Identity:253/881 - (28%)
Similarity:429/881 - (48%) Gaps:116/881 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 AQRHTASDNPSTYNIGGVLSNSDSEEHFSTTIK--HLNFDQQYVPRKVTYYDKTIRMDKNPIKTV 89
            ||:|...|      |..:|..:..|    ..||  |...|..::|  ||.....:.|:::..|::
 Frog    24 AQKHPNMD------IAVILVGTTDE----VAIKDVHEKDDFHHLP--VTPRVALVTMNESDPKSI 76

  Fly    90 F-NVCDKLIENRVYAVVVSHEQTSGDLSPAAVSYTSGFYSI----PVIGI-SSRDAAFSDKNIHV 148
            . .:||.:.:.:|..||.     ..|....|::....|.|:    |::|| .......:||....
 Frog    77 ITRICDLMSDKKVQGVVF-----GDDTDQEAIAQILDFISVQTLTPILGIHGGSSMIMADKEEAS 136

  Fly   149 SFLRTVPPYYHQADVWLEMLSHFAYTKVIIIHSSDTDGRAILGRFQTTSQTYYDDVD--VRATV- 210
            .|.:..|....||.|.|.::..:.:....|:               ||....|.|.:  ||:|: 
 Frog   137 MFFQFGPSIEQQASVMLNIMEEYDWYIFSIV---------------TTYFPGYQDFENKVRSTIE 186

  Fly   211 --------ELIVEFEPKLESFTEHLID-MKTAQSRVYLMYASTEDAQVIFRDAGEYNMTGEGHVW 266
                    |.::..:..|:.....:.: :|..||.|.|:|.:.|:|..||..|....:||.|:.|
 Frog   187 NSFVGWELEEVIHLDMSLDDNDSKIQNQLKKLQSPVILLYCTKEEATYIFEVAHSVGLTGYGYTW 251

  Fly   267 IVTEQALFSNNT-----PDGVLGLQLEHAHSD-KGHIRDSVYVLASAIKEMIS-NETIAEAPKDC 324
            ||........:|     |.|::.:..:....| ...:||.:.::.:|...|:| :.:|.::...|
 Frog   252 IVPSLVAGDTDTVPAEFPTGLISVSYDEWDYDLPARVRDGIAIITTAASTMLSEHNSIPQSKSSC 316

  Fly   325 GDSAVNWESGKRLFQYLKSR---NITGETGQVAFDDNGDRIYAGYDVINIREQQKKHVVGKFSYD 386
                .|.:..:....::..|   |:|.|...::|.::|.:::....:|.:.:|:|...|||:...
 Frog   317 ----YNIQESRVYEAHMLKRYLINVTFEGRNLSFSEDGYQMHPKLVIILLNQQRKWERVGKYKDR 377

  Fly   387 SMRAKMRMRINDSEIIWPGKQRRKPEGIMIPTHLRLLTIEEKPFVYVRRMGDDEFRCEPDERPC- 450
            |:  ||:..:.....::|..:..|.|      ||.::|:||.|||.|..:......|..:..|| 
 Frog   378 SL--KMKYYVWPVFELYPNSEEHKDE------HLSIVTLEEAPFVIVEDVDPLSGTCMRNTVPCR 434

  Fly   451 ---PLFNNSDATAN--EFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILRNNTGAMTLRK 510
               ...|.::...|  :.||:|:|||:|.:::|.:.|||||.|..:|:.|..|  |.|       
 Frog   435 KQIRTENRTEEGGNYIKRCCKGFCIDILKKIAKTVKFTYDLYLVTNGKHGKKI--NGT------- 490

  Fly   511 EWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQGITILEKKPSRSSTLVS---FLQPF 572
             |.|:|||:|.:||.|.|..||||.||:|.::||.||...||:::   .|||:..||   ||:||
 Frog   491 -WNGMIGEVVTKRAYMAVGSLTINEERSEVVDFSVPFIETGISVM---VSRSNGTVSPSAFLEPF 551

  Fly   573 SNTLWILVMVSVHVV-ALVLYLLDRFSPFGRFKLSHSDSNEE--KALNLSSAVWFAWGVLLNSGI 634
            |..:|:::.|.:.:| |:.:::.:.|||.| :....:|..|.  .:..:..|:|..||::.|:.:
 Frog   552 SADVWVMMFVMLLIVSAVAVFVFEYFSPVG-YNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSV 615

  Fly   635 GEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTME---NLTC 696
            ....|:..:::::..|||.||:|.:||||||||||::.|....::||::|.:.:...:   ....
 Frog   616 PVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQRPNDFSPAFRF 680

  Fly   697 ATVKGSSVDMYFRRQVELSNMYRTMEANNYATAEQAIQDVKKGKLMAFIWDSSRLEYEASKD--C 759
            .||...|.:...|.  ....|:..|...|..:.:.|:..:|.|||.|||:|::.|.|.|.:|  |
 Frog   681 GTVPNGSTERNIRN--NYLEMHSYMVKFNQRSVQDALLSLKTGKLDAFIYDAAVLNYMAGRDEGC 743

  Fly   760 ELVT--AGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIFHG--HVQQNCELF 820
            :|||  :|::|..:||||.:||.|.|...|.||||:....|.||:|:..|: .|  |.::|    
 Frog   744 KLVTIGSGKVFATTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWL-TGICHNEKN---- 803

  Fly   821 EKTPNTLGLKNMAGVFILVGVGIAGGVGLIIIEVIY 856
            |...:.|.:.||||||.::...:|..:...|:|.::
 Frog   804 EVMSSQLDIDNMAGVFYMLAAAMALSLITFIMEHLF 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 90/407 (22%)
ANF_receptor 58..371 CDD:279440 75/342 (22%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 149/421 (35%)
HisJ 451..>558 CDD:223904 44/108 (41%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 47/140 (34%)
Lig_chan 575..838 CDD:278489 91/274 (33%)
CaM_bdg_C0 854..882 CDD:287524 0/3 (0%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601 87/392 (22%)
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 148/422 (35%)
NMDAR2_C 837..1449 CDD:402274 0/3 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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