DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nmdar1 and grin3bb

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:XP_017213803.2 Gene:grin3bb / 100333101 ZFINID:ZDB-GENE-131122-77 Length:1114 Species:Danio rerio


Alignment Length:1056 Identity:259/1056 - (24%)
Similarity:455/1056 - (43%) Gaps:187/1056 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 MAEFVFCRPLFGLAIVLLVAPIDAAQR--HTASDNPSTYNIGGVLSNSDSEEHFSTTIKHL---- 61
            :|.|.....:|.|..:||:.|..:..:  |..:....|..:|.:|....|....:...:.|    
Zfish     9 LAYFYLGSQIFLLHTLLLLQPAHSHPQPCHILARIGHTVRLGALLPPRQSVRVRAALHRALSGLA 73

  Fly    62 ---------NFDQQYVPRKVTYYDKTIRMDKNPIKTVFN-VCDKLIENRVYAVVVSHEQTSGDLS 116
                     |.....|.|:....|.         :::|. ||..::...|.| |::..||..:: 
Zfish    74 ESGNNFLPYNLSLDVVAREAQSGDP---------ESLFRCVCQDIVVQGVSA-VLAFPQTQEEI- 127

  Fly   117 PAAVSYTSGFYSIPVIGISSRDAAFSDKN-IHVSFLRTVPP--------YYHQADVWLEMLSHFA 172
             ..:.:.|.|..||.|.|.........:| .|:.....:||        ...|...|.|.::   
Zfish   128 -VQMEFMSSFLEIPFISIIEHGEPLKTQNRFHLQMTTRIPPSGLVELLLAVLQRSGWEESMA--- 188

  Fly   173 YTKVIIIHSSDTDGRAIL----GRFQTTSQTYYDDVDVRATVEL---------IVEFEPKLESFT 224
                ::.|..:..|...|    |||......::    :||.:.|         |.:|      .:
Zfish   189 ----VLCHGWEDAGLLDLLKLQGRFGWGPSQWH----LRAALNLSHSTARMANISDF------LS 239

  Fly   225 EHLIDMKTAQSRVYLMYASTEDAQVIFRDAGEYNMTGEGHVWI----VTEQALFSNNTPDGVLGL 285
            ||.....:..:.|.|..|..|.|..:.|.|.:..:|.....||    ::..||.|...|.|:|..
Zfish   240 EHFNLDHSPPASVLLFGADPECASSVLRSAHDLGLTLPTVHWIMGHPLSPDALHSIGLPLGLLAY 304

  Fly   286 -QLEHAHSDKGHIRDSVYVLASAIK---------EMISNETIAEAPKDCGDSAVNWE---SGKRL 337
             :::|...| .:|.|::.::..|:.         .:|.|..      :|.|.....|   ||:.:
Zfish   305 GEVDHKPLD-FYISDALQLINRAVTAATVVRPDLALIQNMV------NCFDKPNKHELPSSGQYI 362

  Fly   338 FQYLKSRNITGETGQVAFDDNGDRIYAGYDV--INIREQQKKHVVGKFSYDSMRAKMRMRIN-DS 399
            .::|.:.:..|.||.|....|..|::..:.|  .::|    :..||:.::.::.:....|:| :.
Zfish   363 ARFLSNTSFVGLTGPVIVQRNLSRVHTSHKVHIWSLR----RDAVGQPTWVTVGSWEGGRLNVEE 423

  Fly   400 EIIWPGKQ-RRKPEGIM----------IP---THLRLLTIEEKPFVYVRRMGDDEFRCEPDERPC 450
            :.:|.|.. |::.||.|          .|   :.||::|:.|.|||:.|.: |::..|...:...
Zfish   424 QGLWQGSSPRQRTEGQMGREGRRWRAGFPVSGSRLRVVTLVEHPFVFTREV-DEDGNCPAGQYCL 487

  Fly   451 PLFNNSDATANEF------------------CCRGYCIDLLIELSKRINFTYDLALSPDGQFGHY 497
            ....||..|.:..                  ||.|||||||.:||:.:||.:||.:..||::|  
Zfish   488 DAGTNSSETLDHLYAERAQGNKSFLPPDYSKCCYGYCIDLLEKLSEDMNFEFDLYIVGDGKYG-- 550

  Fly   498 ILRNNTGAMTLRKEWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQGITILEKKPSRS 562
                    .....:||||:|:|::..|||.|...:||..|::.|:|:.||....:.||.:....:
Zfish   551 --------AVKGGQWTGLVGDLLSGVADMAVTSFSINSARSKVIDFTSPFFSTSLGILVRSKDTA 607

  Fly   563 STLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLSHSDSNEEKALNLSSAVWFAWG 627
            :.:.:|:.|...::|:.:.|::|:.||.|.|.:..||||   ::....|..|..:.|||:...:.
Zfish   608 APIGAFMWPLHWSMWMGIFVALHITALFLTLYEWKSPFG---MTPHGRNRVKVFSYSSALNLCYA 669

  Fly   628 VLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTME 692
            :|....:...||:.::.|.|..:||.|.:::::||||||||.:|.|:...::|||:||:|.:..:
Zfish   670 ILFGRTVSSKTPKCWTGRFLMNLWAIFCLLVLSSYTANLAAVMVGEKTFEEVSGIHDAKLHHPSQ 734

  Fly   693 NLTCATVKGSSVDMYFRRQVELSNMYRTMEANNYATAEQAIQDVKKG--KLMAFIWDSSRLEYEA 755
            .....||:.||.:.|.::  ....|:..|...|..|....:..:|..  :|.|||.|.:.|:||.
Zfish   735 GFRFGTVRESSAEDYMKK--SFPEMHEYMRKFNEPTTPDGVATLKTDPPQLDAFIMDKALLDYEV 797

  Fly   756 S--KDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIFHGHVQQNCE 818
            |  .||:|:|.|:.|...||||||.:.||.|..::..:..:...|:|:.|..:|  :..|.....
Zfish   798 SIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNISEFVSRYKSDGYMDMLHDKW--YKVVPCGKR 860

  Fly   819 LFEKTPN-TLGLKNMAGVFILVGVGIAGGVGLIIIEVIYKK---HQVKKQKRLDIARHAADK--- 876
            :|..|.. .:|:::.:|:|:|:.||:.|.:..:..|..:.:   ..::::::.....|.:.|   
Zfish   861 VFAVTETLQMGIRHFSGLFVLLCVGVTGALLTLAGEHAFYRLVLPHIRRKQKFKYWLHTSQKIHR 925

  Fly   877 -WRGTIEKRKTIRASLAMQRQYNVGLNSTHAPGTISLAVDKRRYPRLGQRLGPERAWPGDAADVL 940
             ...|.|..|..||:  .::..|:.....|.|            |:... ||....|..::|.| 
Zfish   926 ALNMTYEDVKRQRAN--TEKSCNIQKAQPHPP------------PQPAP-LGSFARWNNESAKV- 974

  Fly   941 RIRRPYELGNPGQSPK 956
                       .|.||
Zfish   975 -----------AQEPK 979

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 91/450 (20%)
ANF_receptor 58..371 CDD:279440 75/367 (20%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 132/425 (31%)
HisJ 451..>558 CDD:223904 40/124 (32%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 38/134 (28%)
Lig_chan 575..838 CDD:278489 84/267 (31%)
CaM_bdg_C0 854..882 CDD:287524 3/34 (9%)
grin3bbXP_017213803.2 PBP1_iGluR_NMDA_NR3 29..428 CDD:107372 86/438 (20%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 130/412 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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