DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar1 and grik6

DIOPT Version :10

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:XP_021335521.1 Gene:grik6 / 100151589 ZFINID:ZDB-GENE-130530-729 Length:465 Species:Danio rerio


Alignment Length:437 Identity:124/437 - (28%)
Similarity:207/437 - (47%) Gaps:51/437 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   467 GYCIDLLIELSKRINFTYDLALSPDGQFGHYILRNNTGAMTLRKEWTGLIGELVNERADMIVAPL 531
            |||:|||.||:|::.|.|.:.|..||.:|......|         |.|:|||:|...||:.||||
Zfish    51 GYCMDLLTELAKKLGFKYKVHLVKDGSYGRQDENGN---------WNGMIGEVVRGEADLAVAPL 106

  Fly   532 TINPERAEYIEFSKPFKYQGITILEKKP--SRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLL 594
            |:...|.:.:..:||:...||:||.:|.  |..:....||.|||...|..::::..|.|:.:.::
Zfish   107 TLTAAREKAVGMTKPYMQTGISILLRKDIVSEEAGFFDFLSPFSGETWFGILIAYFVTAVCICIV 171

  Fly   595 DRFSPF---------GRFKLSHSDSNEEKALNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMV 650
            .|.||.         ..|.|.||             :|:..|.|...|.|. .|::.|.||:...
Zfish   172 GRLSPCEWSQPETEPNHFTLLHS-------------LWYTAGALSLQGAGP-HPKAVSGRVISCT 222

  Fly   651 WAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTMENLTCATVKGSSVDMYFRRQVELS 715
            |..||::::|.|.::|::....:.....:.|..|...::.:|   ..|:.|||...:|:.....|
Zfish   223 WWLFAVVLLACYFSSLSSTQGSDSAPLMIKGFEDLANQDVIE---YGTLAGSSTLAFFKNSNNPS 284

  Fly   716 --NMYRTMEANN--YATAEQAIQDVKKGKLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIG 776
              .:|..||...  .::.::.:|..|:|. .|||.:|..|:...::.||||.|.|:.|..||.|.
Zfish   285 YRRIYEHMERRKSFVSSMDEGVQKAKEGN-YAFIGESVSLDLAVARHCELVRAHEVIGMRGYSIV 348

  Fly   777 LQKGSPWTDAVTLAILEFHESGFMEKLDKQWIFHGHVQQNCELFEKTPNTLGLKNMAGVFILVGV 841
            ...||.....:::|||:..|:|.:..|..:|.....:..|.:     .::|...:|.|:|:::.:
Zfish   349 TPLGSAMLKNLSVAILQLSEAGELAYLRTKWWASSCLPDNAK-----ASSLRAHSMKGIFLVLAI 408

  Fly   842 GIAGGVGLIIIEVIYKKH----QVKKQKRLDIARHAADKWRGTIEKR 884
            |:..||.|.:.|:..|..    :.||.....:.:..:.:.|.|..||
Zfish   409 GLGIGVLLSLFELTTKSRSAAGEQKKSCCTVLTQELSQRLRMTNTKR 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 37..405 CDD:380602
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 108/365 (30%)
CaM_bdg_C0 854..882 CDD:402271 5/31 (16%)
grik6XP_021335521.1 PBP2_iGluR_non_NMDA_like 28..381 CDD:270403 107/356 (30%)
Blue background indicates that the domain is not in the aligned region.

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