DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NKCC and kcc-3

DIOPT Version :9

Sequence 1:NP_730938.1 Gene:NKCC / 40663 FlyBaseID:FBgn0051547 Length:1068 Species:Drosophila melanogaster
Sequence 2:NP_001338828.1 Gene:kcc-3 / 174212 WormBaseID:WBGene00019289 Length:1081 Species:Caenorhabditis elegans


Alignment Length:1234 Identity:285/1234 - (23%)
Similarity:485/1234 - (39%) Gaps:386/1234 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 GFGNFLR--KSDAERKFS-LAQLTKESLPRL------------DNYRISMRNLKR--PSIGELQG 113
            ||.:..|  .|:|.|:|| :.|:..|.|..:            |......:..::  .|:|.|..
 Worm     3 GFQDLRRTVMSNARRRFSTVTQINTEGLQAMGKGGGRMETVGEDGIPADYKGNRKFTTSLGHLAL 67

  Fly   114 EAVDQSI----------TIPEPEPEATGGHIK--LGWIVGVLIPCLLNIWGVMLFLRLSWVVAES 166
            ...|:.|          |.|.|:..||..|:|  ||.::||.:|.:.:|.||.:|:||.|||..|
 Worm    68 YKEDEGIGTQASFISGYTTPGPKERATSEHVKANLGVMLGVYLPTIQHILGVTMFIRLFWVVGMS 132

  Fly   167 GILQSLIIITISAVVCVITTLSLSAISTNGEVKGGGVYFIISRSLGPEFGASVGVVFAFANAVSA 231
            |:..::.::.|..:..::|::||||::|||.|:.||.||||||:||.|||::||::|..||.|:|
 Worm   133 GVAWTMALLAICCLSTLLTSISLSAVATNGVVESGGAYFIISRNLGAEFGSAVGILFYLANTVAA 197

  Fly   232 SMNTIGFCESLNVLL----------KNNDLKIVDNGINDIRIVGSITVLVLILICCVGMEWETKA 286
            ||..:|..|.:.:.|          ..:|.::..:..|::|:.|::.:|:..||..:|:::....
 Worm   198 SMYIVGGVEVILMYLWPEMAIGGADALHDTEMFGSLYNNLRLYGTVFLLIQALIVAMGVKFVQLL 262

  Fly   287 QNFLIVTIVLAIFNFLIGAAIGPQGNEEQISR--------------------------------- 318
            ....::.::||     |.|.|| .|.|:||:.                                 
 Worm   263 APVSLMCVILA-----IAACIG-GGIEKQITMEGMKVCAIDNHLLQSSIVTHPIHKNQTSWFNET 321

  Fly   319 ----------------------------------------------GFVGFSWATLKENFGSDY- 336
                                                          .|.||:..||.:|...:| 
 Worm   322 VDFCNLCDKSLYLESVFCANVNNDEASAEDDVFCTHYTSKKMTCQLAFPGFNMKTLNDNMWPEYM 386

  Fly   337 ------------RYAEGVNHD---FFSVFAIFFPSVTGIQAGANICGDLKDAGAAIPKGTFWSLL 386
                        ..||.|..:   ||.:.||:||:||||..|.|:.|||:|...:||.||..:.|
 Worm   387 EKSEVVPGVRGKETAEVVQDESSTFFMLMAIYFPAVTGIFTGTNMSGDLRDPQRSIPVGTIAATL 451

  Fly   387 ISMSSYALFVLFAGG----AAVRDASGIPADLVNGTIVSSEL----PCMATGNCTWGLFNSYEMM 443
            .:.:.|.:..:..||    :.:||..|   ..:..|:|.:.|    |.:.|              
 Worm   452 TTSAIYYILAILFGGSITRSVLRDKFG---RSIGNTMVVAALSWPHPAVVT-------------- 499

  Fly   444 QEMSLWGPLIYAGCFAATLSTALTNLLSVPRLVQALGIDQIYPGLIFFSKPYGKHGEPYRGYVLT 508
                       .|.|.:|...||..|.|.|||:|::..|.:.|.|..|:: ..|:.||:.|.|||
 Worm   500 -----------VGAFLSTFGAALQCLCSAPRLLQSIAKDDVIPILAPFAR-VTKNNEPFLGLVLT 552

  Fly   509 FFITTGFLLIGELNLIAPLISTFYLASYALINFCTFHAAFVKPLGWRPTFKYYNAWLSLFGFAMC 573
            ..|....:|:|.::.||.::..|:|..||.:|......:.:|...|||.|||::..|||.|.|:|
 Worm   553 VIIAECGILLGAVDKIAEVLDFFFLMCYAFVNLIAVLHSVLKSPNWRPRFKYFHWTLSLLGAALC 617

  Fly   574 VAIMFLINYVAAIITFGIIFALYLVVMYRKPEANWGSTTQAQQYKAALMAVHRLQNVSDHVKNYH 638
            ..|||..:...|.|.......:|..|.::..:..||...:......|..::.::::...|.||:.
 Worm   618 FFIMFASSVPLACIACTATAVIYKYVEWKGAKKEWGDGMRGLALTTAQYSLLKVEDKDPHPKNWR 682

  Fly   639 PQVLVLSGDPKTRP-------PLVDFGYLLTKNNSLMFVANIIPVRVGY---KNRQH-----LVK 688
            ||||:|.....::.       .:::.|..|.....|......:...|..   |||..     |||
 Worm   683 PQVLILLTSQWSKEMIDRRAVSMLNLGAQLKAGRGLAIACAFLKGSVDSQKDKNRARDVKTTLVK 747

  Fly   689 DGQKYLDARKIKA-----FYNVIDGFSLEDGINALTKSTGFGKMSPNIVLVGYKPDWNRCRKEEV 748
            |    :.:.:::.     |||   ...:...|:.|.:|.|.|.:.||.:|:    :|        
 Worm   748 D----MSSVRLRGFAKTMFYN---NHQINGTISGLYQSIGIGGLRPNTILL----NW-------- 793

  Fly   749 ESYFSILYNAFSQRMGVALLRLPNGLDFSELSSEVTLPANGMGHMHTANAHGFTNELMPAANAAS 813
                                  ||..:..||                             ...|.
 Worm   794 ----------------------PNEKNPDEL-----------------------------VLFAE 807

  Fly   814 ELLHIDSNLNLASMDSPNSSFTMPQPAPMPNMQRNSRSYKVTSSDEPAVTYHTKGGSDIPQNLLD 878
            |::|..:|.|...:                                      |||.:|.|: ..:
 Worm   808 EIIHGAANDNCLIV--------------------------------------TKGITDFPE-YSE 833

  Fly   879 AMTIFTRKQPKGTIDVFWLYDDGGLTILLPYIISMRSHWQNSKLRVFAM---------------- 927
            .:|        |.||::|:..|||:.:|:.|::.....|:...||:||:                
 Worm   834 RLT--------GFIDIWWIVQDGGILMLIAYLLRQHKVWKGCTLRIFAVSEQDSTKSEDMKAGLQ 890

  Fly   928 --------------------------------CHGKDEEQEE--KSMASLLT-----------KF 947
                                            ...|.:|:||  :|.:..|.           :.
 Worm   891 KYIYMLRIDAELFIVDLLDMEVSDEVVEKAAEVERKQKEREEMRRSKSGYLNDGFMEDNGKPRQV 955

  Fly   948 RIKYSELIMLKGVSEQPRADTVLKHKRLIEPFRRGARNEF---GITDDELQSMSE----KTNRQL 1005
            .:::|:  ..:..|.||.|.|.:........|.....::|   |..:::|:...:    |.|..:
 Worm   956 MMRHSD--SARSFSPQPGAHTSINLDETETSFTESLFDDFYRSGTPNEDLEGAMKLNIHKMNTSV 1018

  Fly  1006 RIHELVVKHSSNASLVVMSLPMPRKEAIS-APLYMSWLEMLTSDMKCPVALARGNQTPVLTLYS 1068
            |::.::.::|.::.|::::||.|.:..:: ...||::|::||.|:. .|....|:...|:|:.|
 Worm  1019 RLNRVIRENSPDSQLILLNLPSPPRNRLAFNNSYMTYLDVLTEDLP-RVLFIGGSGREVITIDS 1081

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NKCCNP_730938.1 2a30 85..1068 CDD:273347 275/1210 (23%)
DUF502 507..>643 CDD:294696 41/135 (30%)
SLC12 651..1068 CDD:281515 86/505 (17%)
kcc-3NP_001338828.1 SLC12 61..1081 CDD:332077 272/1174 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57166
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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