DRSC/TRiP Functional Genomics Resources

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Protein Alignment ksr and raf1b

DIOPT Version :9

Sequence 1:NP_001287177.1 Gene:ksr / 40660 FlyBaseID:FBgn0015402 Length:966 Species:Drosophila melanogaster
Sequence 2:NP_001186684.1 Gene:raf1b / 557109 ZFINID:ZDB-GENE-090826-2 Length:629 Species:Danio rerio


Alignment Length:708 Identity:201/708 - (28%)
Similarity:299/708 - (42%) Gaps:209/708 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   325 PDSHSSTSSDIFVDPN-----TNASSGGSSSNVL--------MVPCSPGVGHVGMGHAIK----- 371
            |||.:|::..:|: ||     .|..:|.:..|.|        :.|....|..:...|:.|     
Zfish    48 PDSKTSSTIRVFL-PNKQRTVVNVRAGMTLRNCLIKALKVRGLQPECCAVFKLQREHSAKKLRMD 111

  Fly   372 -------------------------HRFT-KALGFMATCTLCQKQVFHRWMKCTDCKYICHKSCA 410
                                     |.|. |....:|.|.:|||.:.|.: :|..|.|..|:.|:
Zfish   112 WSTDSTSLVGEELLVEVLDHVPLTTHNFVRKTFLKLAFCDICQKFLLHGF-RCQTCGYKFHEHCS 175

  Fly   411 PHVPPSCGLPREYVDEFRHIKE--------QGGYASLPHVHGAAKGSPLVKKSTLG-KPLHQQHG 466
            ..||..|      || :.:|::        :.|..:||.:     .|..::.|... .|.|:.  
Zfish   176 TKVPTMC------VD-WSNIRQLLLFPTPGENGALTLPPL-----SSRRMQNSRFSFSPYHRY-- 226

  Fly   467 DSSSPSSSCTSSTPSSPALFQQRERELDQAGSSSSANLLPTP--SLGKHQPSQFNFPNVTVTSSG 529
              |:| ::....||                        ||:|  ||| |:....:.|||.:.|  
Zfish   227 --STP-NALNYITP------------------------LPSPGVSLG-HKVLSTSTPNVHMVS-- 261

  Fly   530 GSGGVSLISNEPVPEQFPTAPATANGGLDSLVSSSNGHMSSLIGSQTSNASTAATLTGSLVNSTT 594
                    :.:||.|.                    .:..:|...::.:                
Zfish   262 --------TTQPVDEA--------------------AYQEALRHDESGS---------------- 282

  Fly   595 TTSTCSFFPRKLSTAGVDKRTPFTSEYTDTHKSNDSDKTVSLSGSASTDSDRTPVRVDSTEDGDS 659
                    |:.||.....| ||..:.......||..:|                 |:...|..||
Zfish   283 --------PQNLSPTEWSK-TPAPAHREKAPSSNTQEK-----------------RIRPREKRDS 321

  Fly   660 GQWRQNSISLKEWDIPYGDLLLLERIGQGRFGTVHRALWHGDVAVKLLNEDYLQDEHMLETFRSE 724
            ..:         |:|...::|||.|||.|.||||::..||||||||:|.......| .|:.||:|
Zfish   322 SYY---------WEIEATEVLLLSRIGSGSFGTVYKGKWHGDVAVKILKVINPTPE-QLQAFRNE 376

  Fly   725 VANFKNTRHENLVLFMGACMNPPYLAIVTSLCKGNTLYTYIHQRREKFAMNRTLLIAQQIAQGMG 789
            ||..:.|||.|:||||| .|....|||||..|:|::||.::|.:...|.|.:.:.||:|.||||.
Zfish   377 VAVLRKTRHVNIVLFMG-YMTKVKLAIVTQWCEGSSLYKHLHVQETNFQMFQLMDIARQTAQGMD 440

  Fly   790 YLHAREIIHKDLRTKNIFIENGKVI-ITDFGLFSSTKLLYCDMGLGVPHNWLCYLAPELIRALQP 853
            ||||:.|||:|:::.|||:..|..: |.||||.:..........:..|...:.::|||:|| :|.
Zfish   441 YLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKARWSGSHRVEQPSGSILWMAPEVIR-MQD 504

  Fly   854 EKPRGECLEFTPYSDVYSFGTVWYELICGEFTF-----KDQPAESIIWQVGRG-MKQSLANLQSG 912
            ..|      ::..|||||:|.|.|||:.||..:     :||    ||:.|||| :...|:.|...
Zfish   505 NNP------YSFQSDVYSYGIVLYELMTGELPYSMIGNRDQ----IIFMVGRGYLSPDLSKLYKS 559

  Fly   913 --RDVKDLLMLCWTYEKEHRPQFARLLS---LLEH-LPKKRLARSPSHPVNLSRSAES 964
              :.:|.|:..|....||.||.|.::||   ||:| |||  :.||.|.| :|.|:..:
Zfish   560 CPKAMKRLVSDCIQKTKEERPLFPQILSSIELLQHSLPK--INRSASEP-SLHRATHT 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ksrNP_001287177.1 KSR1-SAM 33..166 CDD:290277
C1_1 368..419 CDD:278556 19/81 (23%)
PK_KSR 678..946 CDD:270965 118/280 (42%)
Pkinase_Tyr 679..940 CDD:285015 113/272 (42%)
raf1bNP_001186684.1 Raf_RBD 55..129 CDD:176411 11/74 (15%)
C1_1 137..185 CDD:278556 19/55 (35%)
PKc_like 319..601 CDD:328722 123/305 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0193
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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