DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hcs and Hlcs

DIOPT Version :10

Sequence 1:NP_001287175.1 Gene:Hcs / 40659 FlyBaseID:FBgn0037332 Length:1047 Species:Drosophila melanogaster
Sequence 2:NP_001346974.1 Gene:Hlcs / 110948 MGIID:894646 Length:869 Species:Mus musculus


Alignment Length:1100 Identity:280/1100 - (25%)
Similarity:443/1100 - (40%) Gaps:285/1100 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLTLYYVSATVLQSWRIQKACSKIAEHLAQPSSIAFYTLQSGSDDGFDPALASSELCCNRNAAKV 65
            ::||.|     |..|         |....:|:::...|::.     ...:..|...|  |.||:.
Mouse     2 LITLCY-----LYLW---------ARWGRRPAALVLSTVRR-----LRASRCSFTFC--RAAAQP 45

  Fly    66 TDI-LWLHANQRGCCLRPLQTL-HITPWISFPPAPSLLPFSYAADTLTPASTPTEADVPRQQRVS 128
            .|. :.|....|..|:...|:: .:..|..|..:|.:|...:.|..       ||         |
Mouse    46 RDARVCLSQGGRVFCVGESQSVDDLNKWALFLVSPFILEAEHIAFV-------TE---------S 94

  Fly   129 LSAQGEERMQLLLEADIEPLQRPSSEDTSAVRLEDYGKLIAWKIDSHLAVLIETDVEHFTKLLIT 193
            :..||..            ||.|||.:|          ::.|                       
Mouse    95 IWIQGTS------------LQEPSSSET----------VVKW----------------------- 114

  Fly   194 TFLRNNLCINDQLPLLRIESVQREGDPQPFELLAK-HLKRQSRISVGLDKDGWKKHMEDLRAVGV 257
                ::.|    |||     ..|.||  |::|:|| .:...|::.|...:|  :..|::    |:
Mouse   115 ----SDCC----LPL-----ACRPGD--PYQLIAKASVDNFSKLGVAFMED--RLQMDN----GL 158

  Fly   258 LAHQATEFEYQRNRSEGRTKSDPTTHDQRPTSELLAKAVAVVEPTNKAYLSPARTTEASLKA--- 319
            :|.:..                 :.|.:.|..:.|.||      ::|....|....|||.:|   
Mouse   159 IAQKIV-----------------SVHLKDPALKELGKA------SDKQVQGPPPGPEASPEAQPA 200

  Fly   320 ----------EAKGTSTKPFPTKSDAKPATLAKSEGTPATSKEDSKLTPTKGALKTS------EL 368
                      :.|.....|.|.:....|.:...::|.|..|      :|....|..|      ||
Mouse   201 QGVMEHAGQGDCKAAGEGPSPRRRGCAPESEPAADGDPGLS------SPELCQLHLSICHECLEL 259

  Fly   369 EKLAAVQAAQQQKKEAVQVSPVKAAFLAKPPMLSKHDEPDKASDQPTKPRKSFEAVKPLNSPPSS 433
            |. :.:.:.:....|.:            |.:...|...:.|:.:....||.    |.:|   .|
Mouse   260 EN-STIDSVRSASAENI------------PDLPCDHSGVEGAAGELCPERKG----KRVN---IS 304

  Fly   434 RAAPSRPVLQRNKDSLQDAKPLNVLVYSDSASARESTLATLQQL-------LERNVYTIYPLMPQ 491
            ..||                  |:|:|..|.|  |..|..|||:       ::.:.||:|.|:..
Mouse   305 GKAP------------------NILLYVGSGS--EEALGRLQQVRSVLTDCVDTDSYTLYHLLED 349

  Fly   492 QAAQKYWTEQTALLVVCG--SVAHGIGQILVDYFLQGGKVLSLCSDILHFVLPNYRTA--EVREH 552
            .|.:..|::...|||:..  .:...|....:.|..||||||.|.|.   |.|..:|..  :|..:
Mouse   350 SALRDPWSDNCLLLVIASRDPIPKDIQHKFMAYLSQGGKVLGLSSP---FTLGGFRVTRRDVLRN 411

  Fly   553 ELVQFSYDKWQ----RVKMMHHIFCYQPSPVKKHFSTDSEESTKSHSRKPALVCPRSMELKDLAG 613
            .:....:.|..    |:.::...:.|:..|                            .|..|.|
Mouse   412 TVQNLVFSKADGTEVRLSVLSSGYVYEEGP----------------------------SLGRLQG 448

  Fly   614 HSHNLD-----VHV-LGTEETWNTPSLMLAKSLQSGGKAVFSQVHLEMNP-SEFESDETKYSILK 671
            |..|.|     ||| .||                .||:||..|||||:.| :........:::||
Mouse   449 HLENEDKDKMIVHVPFGT----------------LGGEAVLCQVHLELPPGASLVQTADDFNVLK 497

  Fly   672 QNERTRLEIFADLLGKYLDVQVRGGDGVDQPQPGVVYKHAYFLGRHEAKFELLEKLRLRCSGSDN 736
            .:...|.|:..::|...       |...|.||...:......|...|.:...::.|. |.:..:.
Mouse   498 SSNVRRHEVLKEILTAL-------GLSCDAPQVPALTPLYLLLAAEETQDPFMQWLG-RHTDPEG 554

  Fly   737 VIATPNLTMKFCGKDDKPPVANNNVLPILIHS---CPDDFSTVDYFDNLKTEHIGRLVIYAPVVS 798
            :|.:..|:::|............:.:|::...   ..:.||...|..||:|..:|:::::|.|.|
Mouse   555 IIKSSKLSLQFVSSYTSEAEITPSSMPVVTDPEAFSSEHFSLETYRQNLQTTRLGKVILFAEVTS 619

  Fly   799 SSMHLINNL------ELIHGLAVLPVQQTSGVGRRNNQWLSPPGCAMFSLQLHLTMDSALSSRLP 857
            ::|.|::.|      |:  ||..:.|:||.|.||..|.||||.|||:.:|.:.:.:.|.|..|:|
Mouse   620 TTMSLLDGLMFEMPQEM--GLIAIAVRQTQGKGRGPNAWLSPVGCALSTLLVFIPLRSQLGQRIP 682

  Fly   858 LLQHLVGTAIVNSLRSHEEYGVLDISIKWPNDIYANGNQKIGGLVINTTLQGSQAIVNIGSGINL 922
            .:|||:..|:|.::||...|..:::.:|||||||.:...||||:::|:||.|....:.||.|.|:
Mouse   683 FVQHLMSLAVVEAVRSIPGYEDINLRVKWPNDIYYSDLMKIGGVLVNSTLMGETFYILIGCGFNV 747

  Fly   923 NNSRPTVCINDLIREYNTRVPNNKLPILKYELLIAMIFNEIERLLGEVQNGDFDSFYALYYSLWL 987
            .||.||:||||||.|:|.:......| |:.:.|||.....:|:|:...|:...|....|||..|:
Mouse   748 TNSNPTICINDLIEEHNKQHGAGLKP-LRADCLIARAVTVLEKLIDRFQDQGPDGVLPLYYKYWV 811

  Fly   988 HSGQSVKICLQKDQEKEAEIVGIDDFGFLEVKLPTGTIEIVQPDGNSFDMLKGLIIPKYQ 1047
            |.||.|:  |...:..:|.|||:||.|||:|....|.:..|.|||||||||:.||:||.|
Mouse   812 HGGQQVR--LGSTEGPQASIVGLDDSGFLQVHQEDGGVVTVHPDGNSFDMLRNLIVPKRQ 869

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcsNP_001287175.1 HC2 268..437 CDD:369339 33/187 (18%)
BPL_N 455..>533 CDD:462915 27/86 (31%)
BirA2 791..1028 CDD:440109 96/242 (40%)
HlcsNP_001346974.1 BPL_N 309..531 CDD:462915 67/277 (24%)
BPL 610..790 CDD:319741 73/182 (40%)
BPL_C 812..859 CDD:426672 23/48 (48%)

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