DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snr1 and Smarcb1

DIOPT Version :9

Sequence 1:NP_730935.1 Gene:Snr1 / 40657 FlyBaseID:FBgn0011715 Length:370 Species:Drosophila melanogaster
Sequence 2:XP_006256380.1 Gene:Smarcb1 / 361825 RGDID:1308761 Length:385 Species:Rattus norvegicus


Alignment Length:386 Identity:254/386 - (65%)
Similarity:301/386 - (77%) Gaps:20/386 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAL-QTYGDKPVAFQLEEGGEYYYVGSEVGNYMRHFRGILYKKYPGMTRIVLSNEERKRLAESGL 64
            ||| :|:|.|||.||||:.||:|.:|||||||:|.|||.|||:||.:.|.:.:.||||::.   .
  Rat     4 MALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIV---A 65

  Fly    65 SSH--------------ILASSVSLLRAVEVDDIMAGNDEKYRAVSVNTSDTPVPRESKSKKQPQ 115
            |||              .||:||:||:|.||::|:.||||||:|||::|......||.|:|:..|
  Rat    66 SSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNSQ 130

  Fly   116 YVPTMPNSS-HLDAVPQATPINRNRVHTKKVRTFPMCFDDTDPTASLENAAQKECLVPIRLDMEL 179
            :|||:|||| ||||||.:|.|||||:...|.||||:||||.||....|||:|.|.|||||||||:
  Rat   131 WVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEI 195

  Fly   180 EGQKLRDTFTWNKNESMITPEQFAEVLCDDLDLNPLPFVPAIAQAIRQQIEAFPNDPPILEETCD 244
            :||||||.||||.||.::|||.|:|:||||||||||.||||||.|||||||::|.| .|||:..|
  Rat   196 DGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYPTD-SILEDQSD 259

  Fly   245 QRVIVKLNIHVGNTSLVDQVEWDMSEKNNNPEEFAIKLCAELGLGGEFVTAIAYSIRGQLSWHCR 309
            ||||:||||||||.|||||.|||||||.|:||:||:|||:||||||||||.||||||||||||.:
  Rat   260 QRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQK 324

  Fly   310 TYAFSEAPLSTIDVPFRNPSDADAWAPFLETLTDAEMEKKIRDQDRNTRRMRRLANTTTGW 370
            ||||||.||.|:::..||..|||.|.|.|||||||||||||||||||||||||||||...|
  Rat   325 TYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snr1NP_730935.1 WH_NTD_SMARCB1 5..92 CDD:411036 50/100 (50%)
SNF5 165..348 CDD:398495 136/182 (75%)
Smarcb1XP_006256380.1 WH_NTD_SMARCB1 9..107 CDD:411036 50/100 (50%)
SNF5 181..363 CDD:398495 136/182 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166347788
Domainoid 1 1.000 196 1.000 Domainoid score I3037
eggNOG 1 0.900 - - E1_KOG1649
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2310
Inparanoid 1 1.050 506 1.000 Inparanoid score I1284
OMA 1 1.010 - - QHG45849
OrthoDB 1 1.010 - - D343144at33208
OrthoFinder 1 1.000 - - FOG0002902
OrthoInspector 1 1.000 - - oto96572
orthoMCL 1 0.900 - - OOG6_103095
Panther 1 1.100 - - LDO PTHR10019
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1914
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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