DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snr1 and snf5

DIOPT Version :10

Sequence 1:NP_730935.1 Gene:Snr1 / 40657 FlyBaseID:FBgn0011715 Length:370 Species:Drosophila melanogaster
Sequence 2:NP_592979.2 Gene:snf5 / 2541801 PomBaseID:SPAC2F7.08C Length:598 Species:Schizosaccharomyces pombe


Alignment Length:265 Identity:86/265 - (32%)
Similarity:135/265 - (50%) Gaps:59/265 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 TDPTASLENAAQKEC---LVPIRLDMELEGQKLRDTFTWNKNESMITPEQFAEVLCDDLD--LNP 214
            |.|.:...|.||.:.   ||||||:::.:..||||:||||..:..|:.:||||.:|.|.|  |:.
pombe    89 TFPFSRRSNLAQSKLPVDLVPIRLEIDADRYKLRDSFTWNLYDKCISLDQFAEQICIDYDIPLHN 153

  Fly   215 LPFVPAIAQAIRQQIEAF---------------------------PNDP---------PILEETC 243
            :..|..|:::|:.||..:                           |:|.         |.::.  
pombe   154 VHIVQNISKSIQAQINDYEPRKAQSNLSFVSDVSSSTSETVYAHEPSDSLAKASKQQIPTVQN-- 216

  Fly   244 DQRVIVKLNIHVGNTSLVDQVEWDMSEKNNNPEEFAIKLCAELGLGGEFVTAIAYSIRGQLSWHC 308
            |.|:::||:|.:|..:|:||.||::....::.||||..:|.:|||.|||.||:|:|||.|...:.
pombe   217 DLRILIKLDITIGRLNLIDQFEWNLFAPESSAEEFATVMCLDLGLSGEFCTAVAHSIREQCQMYI 281

  Fly   309 R-----TYAFSEAPLSTIDV------PFRN-----PSDADAWAPFLETLTDAEMEKKIRDQDRNT 357
            :     .|.|..:.:...:|      |.:|     ..::.::||.:..|.|||||::.|..||..
pombe   282 KYLSLIGYLFDGSEIEDEEVRSYILPPLKNTLRFSDMESSSFAPMIYELNDAEMERQDRGYDREA 346

  Fly   358 RRMRR 362
            |||||
pombe   347 RRMRR 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snr1NP_730935.1 WH_NTD_SMARCB1 5..92 CDD:411036
SNF5 165..348 CDD:428158 74/239 (31%)
snf5NP_592979.2 SNF5 103..338 CDD:428158 73/236 (31%)
Blue background indicates that the domain is not in the aligned region.

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