DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11999 and Pomt2

DIOPT Version :10

Sequence 1:NP_649527.1 Gene:CG11999 / 40637 FlyBaseID:FBgn0037312 Length:216 Species:Drosophila melanogaster
Sequence 2:NP_001040579.1 Gene:Pomt2 / 688673 RGDID:1586427 Length:820 Species:Rattus norvegicus


Alignment Length:157 Identity:56/157 - (35%)
Similarity:80/157 - (50%) Gaps:25/157 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 GSILKLLNSDYAF-RLHSHDVKY--GSGSGQQSVTGVEQKEDVNSHWVIK---AQTGELCERGEP 88
            ||::.:.|...|. .||||...|  |.|:.||.||....| |.|:.|:||   ..|..|    :|
  Rat   410 GSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVTTYLHK-DYNNLWIIKKYNTNTDPL----DP 469

  Fly    89 ------IACGSTVRLEHLSTKKNLHSHHFSSPLSGEQ-EVSAYGTDGLGDTGDHWEVVCSNENW- 145
                  :..|..:||||..|.:|||||:..:||:.:. :|:.||.:|.||:.|.|.:...|..: 
  Rat   470 SFPVEFVRHGDIIRLEHKETTRNLHSHYHEAPLTRKHYQVTGYGINGTGDSNDFWRIEVVNRKFG 534

  Fly   146 -----MRSAHVRLRHIDTGMYLGMSGR 167
                 :|| .:|..|:.||..||.||:
  Rat   535 NRIKVLRS-RIRFIHLVTGCVLGSSGK 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11999NP_649527.1 beta-trefoil_MIR_SDF2_meta 27..201 CDD:467764 56/157 (36%)
Pomt2NP_001040579.1 PMT 132..376 CDD:396786
beta-trefoil_MIR_POMT2 407..593 CDD:467753 56/157 (36%)
PMT_4TMC 612..816 CDD:465056
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.