DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment rtp and als2a

DIOPT Version :9

Sequence 1:	NP_649520.1	Gene:	rtp / 40627	FlyBaseID:	FBgn0087005	Length:	198	Species:	Drosophila melanogaster
Sequence 2:	XP_021334529.1	Gene:	als2a / 557014	ZFINID:	ZDB-GENE-070402-2	Length:	1662	Species:	Danio rerio

Alignment Length:	98	Identity:	40/98 - (40%)
Similarity:	52/98 - (53%)	Gaps:	7/98 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly    57 RYEDASRYIGEWNQRGQKHGIGHLQFADGTRYDGQFQEGLSQGVG-----CLWFADGAKYEGEFH 116
            |.:|| :|.|.| ..|:.||.|:|::.|||.|.|.|:.||..|.|     ...|....:|:|.:.
Zfish  1052 RLKDA-KYEGRW-LSGKPHGKGNLKWPDGTMYCGTFKSGLEDGFGDFMTPSTTFNKFERYQGHWK 1114

  Fly   117 QGWFHGNGIFWRADGMKYEGEFRGGKIWGLGLL 149
            :|..||.|.||.|.|..|||.||.....|.|:|
Zfish  1115 EGKMHGFGTFWYASGEVYEGSFRENMRHGHGML 1147

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
rtp	NP_649520.1	COG4642	54..>151	CDD:332236	40/98 (41%)
als2a	XP_021334529.1	RCC1	<33..215	CDD:332518
		RCC1	529..576	CDD:306840
		RCC1_2	563..592	CDD:316098
		RCC1	581..627	CDD:306840
		PH_alsin	907..1018	CDD:241423
		COG4642	1058..>1222	CDD:332236	37/91 (41%)
		COG4642	1182..>1275	CDD:332236
		VPS9	1559..1657	CDD:308039
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910