DRSC/TRiP Functional Genomics Resources

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Protein Alignment rtp and Jph4

DIOPT Version :9

Sequence 1:NP_649520.1 Gene:rtp / 40627 FlyBaseID:FBgn0087005 Length:198 Species:Drosophila melanogaster
Sequence 2:NP_001003711.2 Gene:Jph4 / 445271 RGDID:1303170 Length:628 Species:Rattus norvegicus


Alignment Length:114 Identity:34/114 - (29%)
Similarity:48/114 - (42%) Gaps:19/114 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 SVGVTTARIENQHQQHPHQQGQHGHHQQGQGQSQYSAGAVKVGGWRYEDASRYIGEWNQRGQKHG 76
            |:||.|.         |......||.|||:.:   ..|..:...|.|.      ||| ..|.|..
  Rat    49 SLGVFTG---------PGGHSYQGHWQQGKRE---GLGVERKSRWTYR------GEW-LGGLKGR 94

  Fly    77 IGHLQFADGTRYDGQFQEGLSQGVGCLWFADGAKYEGEFHQGWFHGNGI 125
            .|..:...|.||.|.:::|...|.|...::||..|:|::..|..||.|:
  Rat    95 SGVWESVSGLRYAGLWKDGFQDGYGTETYSDGGTYQGQWQAGKRHGYGV 143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rtpNP_649520.1 COG4642 54..>151 CDD:332236 23/72 (32%)
Jph4NP_001003711.2 PLN03185 5..>143 CDD:215619 33/112 (29%)
PLN03185 281..>340 CDD:215619
PRK07003 <369..>606 CDD:235906
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4642
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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