DRSC/TRiP Functional Genomics Resources

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Protein Alignment rtp and CG14490

DIOPT Version :9

Sequence 1:NP_649520.1 Gene:rtp / 40627 FlyBaseID:FBgn0087005 Length:198 Species:Drosophila melanogaster
Sequence 2:NP_611274.1 Gene:CG14490 / 37041 FlyBaseID:FBgn0034281 Length:197 Species:Drosophila melanogaster


Alignment Length:169 Identity:52/169 - (30%)
Similarity:68/169 - (40%) Gaps:48/169 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 QQHPHQQGQH---GHHQQGQGQSQYSAGAVKVGGWRYEDASRYIGEWNQRGQKHGIGHLQ----- 81
            |::|..|.|.   |....|.|..|.|:|.|            |.|.| |:||:||||.|:     
  Fly    15 QRYPGGQYQGKWLGQQPHGFGVKQTSSGLV------------YEGHW-QKGQRHGIGSLRRKELD 66

  Fly    82 -----------------------FADGTRYDGQFQEGLSQGVGCLWFADGAKYEGEFHQGWFHGN 123
                                   :.||:.|.||:......|.|.||.|||..|.||:.:...|..
  Fly    67 GRMERIYVGQWRENKRSGEGKQFYPDGSVYFGQWLADQRSGEGILWQADGGIYVGEWLRDKMHEK 131

  Fly   124 GIFWRADGMKYEGEFRGGKIWGLGLL----TFQDFTHGF 158
            |:.:.|.|.:|.|:|.||...|.|:.    ..|...|||
  Fly   132 GLLFTATGNRYVGQFEGGCKSGSGVFYHASNGQRIQHGF 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rtpNP_649520.1 COG4642 54..>151 CDD:332236 37/128 (29%)
CG14490NP_611274.1 COG4642 35..170 CDD:226989 44/147 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4642
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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