DRSC/TRiP Functional Genomics Resources

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Protein Alignment rtp and LOC3290568

DIOPT Version :10

Sequence 1:NP_649520.1 Gene:rtp / 40627 FlyBaseID:FBgn0087005 Length:198 Species:Drosophila melanogaster
Sequence 2:XP_061504334.1 Gene:LOC3290568 / 3290568 VectorBaseID:AGAMI1_001953 Length:874 Species:Anopheles gambiae


Alignment Length:318 Identity:60/318 - (18%)
Similarity:86/318 - (27%) Gaps:166/318 - (52%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 PHQQGQHGHHQQGQGQSQYSAGAVKVGGWRYEDASRYIGEWNQRGQKHGIGHLQFADGT-RYDGQ 91
            |......||.|.|:   ::..|....|.|.|.      |||.| |.|...|..|.|..| ||:|.
Mosquito    80 PSGSTYEGHWQNGK---RHGLGLEVRGRWVYR------GEWTQ-GFKGRYGVRQSASSTARYEGT 134

  Fly    92 FQEGLSQGVGCLWFADGAKYEGEFHQGWFHGNGI------------------------------- 125
            :..||..|.|...:|||..|:|::.:|..||.|:                               
Mosquito   135 WANGLQDGYGSETYADGGSYQGQWQRGMRHGYGVRTSAPFGMAARFRPKSVRLSMTSLRSADGGN 199

  Fly   126 ----------------------------------------------------------------- 125
                                                                             
Mosquito   200 QAPTPDPGEKRNHRIDDARGGFVLKAKSDETPVRRNSLVEKTKKGLLSVSVLRSFDLHLLNGTMH 264

  Fly   126 ------------------------FW------------RADGMKYEGEFRGGKIWGLGLLTFQDF 154
                                    .|            |:||:|||||:...|.:|.|:.||:|.
Mosquito   265 TDSNASFIVEDEQLEASVVETYMGEWKNDKRCGYGISERSDGLKYEGEWYANKKYGYGVTTFKDG 329

  Fly   155 THGFPRNEGFFQD-----------------CRFMRRRRCPEVVQRAQKCALMARSQCE 195
            |    :.||.:::                 .:|  |.|....|..||:.:..|..:.:
Mosquito   330 T----KEEGKYKNNVLITSQKKRHLFLIRSAKF--RERIDAAVDSAQRSSKYALQKAD 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rtpNP_649520.1 COG4642 <53..153 CDD:443680 43/232 (19%)
LOC3290568XP_061504334.1 None

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