DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sccpdh1 and Sccpdh

DIOPT Version :9

Sequence 1:NP_649517.1 Gene:Sccpdh1 / 40623 FlyBaseID:FBgn0037298 Length:430 Species:Drosophila melanogaster
Sequence 2:XP_017176959.2 Gene:Sccpdh / 109232 MGIID:1924486 Length:524 Species:Mus musculus


Alignment Length:436 Identity:166/436 - (38%)
Similarity:243/436 - (55%) Gaps:52/436 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VIIFGASGFTGKYTVFE------AVTVLRGLRWGIAGRNREKLEAVLKEMGAKAKKD--LSQVPI 64
            :::||||||||::...|      |......|.|.:|||::|||:.||::...|..:.  .|:|.:
Mouse   124 LVVFGASGFTGQFVTEEVAREQIASEQSSRLPWAVAGRSKEKLQQVLEKAAQKLGRPSLSSEVGV 188

  Fly    65 FIADVNDQASLLEMAKKCRIVVNTAGPYRFHGENVVKCCIESGTHHVDVSGEPQYMETMQLRYDQ 129
            .|.|:::.|||.||||:.::|:|..|||||:||.|||.|||:||..:|:.||||::|.|..:|.:
Mouse   189 IICDISNPASLDEMAKQAKLVLNCVGPYRFYGEPVVKACIENGTSCIDICGEPQFLELMHAKYHE 253

  Fly   130 LAREKGVYVVSACGFDSIPADMGVVFVEKNFDGVVNSVETFLETGIKEGGSGGGTAGLNYGTWES 194
            .|.|||||::.:.||||||||:||::.....:|.:.:||:||.  |..|..|   ..::.|||:|
Mouse   254 KAAEKGVYIIGSSGFDSIPADLGVLYTRNQMNGTLTAVESFLT--INTGPEG---LCIHDGTWKS 313

  Fly   195 AVYGLAHSDELRGIRKQIYPQRLPRFYPFLKPRPLVFRSTEVDKVCLPFPGSDRSVVMRSQRFLY 259
            |:||......||.:|.....:.:|.....||.|..|....|::...:||.|||.|||.|:||:|:
Mouse   314 AIYGFGDKGSLRKLRSVSCLKPVPIVGTKLKRRWPVSYCRELNSYSIPFLGSDISVVKRTQRYLH 378

  Fly   260 DQDKKRPVQMQAYVGFSSWLVAGGV-----IFFATIFGL-LSKFKLGRTLLLNYPGLFSGGLASR 318
            :..:..|||..|||      ..||:     :.||.:|.| ..||.:||.||:             
Mouse   379 ENLEDSPVQYAAYV------TVGGITSVIKLMFAGLFFLFFVKFSIGRQLLI------------- 424

  Fly   319 SGPSEESMERTYFKMTFKASGWLKSDRLAESSNQYTESPTKTLMVRVSGMNPGYGATCVAVLSAA 383
                  .|:.|.|.|||...|:  |.......|:    |...:..:|.|...||.||.:|::.||
Mouse   425 ------KMDETSFTMTFFGQGY--SHGTCVEKNK----PNIRICTQVKGPEAGYVATPIAMVQAA 477

  Fly   384 LTILRESDKMPSTGGVLPPAAAFSKTGLISELEKHDHGIKFEILAN 429
            :|.|.::..:|..|||..|.||||:|.||..|.|  |||:|.::::
Mouse   478 MTFLSDASDLPKGGGVFTPGAAFSRTKLIDRLNK--HGIEFSVISS 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sccpdh1NP_649517.1 COG3268 7..426 CDD:225807 166/431 (39%)
Sacchrp_dh_NADP 8..139 CDD:281434 63/138 (46%)
SccpdhXP_017176959.2 COG3268 115..516 CDD:225807 165/429 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845755
Domainoid 1 1.000 173 1.000 Domainoid score I3679
eggNOG 1 0.900 - - E1_COG3268
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9334
Inparanoid 1 1.050 295 1.000 Inparanoid score I2724
Isobase 1 0.950 - 0 Normalized mean entropy S4069
OMA 1 1.010 - - QHG56565
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002586
OrthoInspector 1 1.000 - - otm43569
orthoMCL 1 0.900 - - OOG6_101495
Panther 1 1.100 - - LDO PTHR12286
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4081
SonicParanoid 1 1.000 - - X1697
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.740

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