DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta2R2 and psmb1

DIOPT Version :9

Sequence 1:NP_649515.3 Gene:Prosbeta2R2 / 40621 FlyBaseID:FBgn0037296 Length:322 Species:Drosophila melanogaster
Sequence 2:NP_988993.1 Gene:psmb1 / 394589 XenbaseID:XB-GENE-970603 Length:239 Species:Xenopus tropicalis


Alignment Length:213 Identity:42/213 - (19%)
Similarity:83/213 - (38%) Gaps:39/213 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 NSFT-TGTTVVGIVFDGGVIIGAESRATSGGIVFSKTCRKIIELQANIFAAGAGTARDTKALVEL 107
            |.:| .|.||:.:..|...::.:::|.:.|..:.|:...|..:|..|......|...|...|.::
 Frog    29 NPYTFNGGTVLALAGDDFALVASDTRLSEGYSIHSRNTPKCYKLTDNTVIGCTGFHADCLTLTKI 93

  Fly   108 TRAQLELHR------MNTGFRKVPVCCANQMIRQLLFR--------FNGNIDADMIIGGADNTG- 157
            ..|:|::::      |.:|       ....|:..:|:.        :|       ||||.|..| 
 Frog    94 IEARLKMYKHSNNKTMTSG-------AIAAMLSTILYSRRFFPYYVYN-------IIGGLDEEGK 144

  Fly   158 AHLFCTRSDGSTDTAPFTSIGSGYQVSMSILESRWSE---------DLSEESACALACDAVAAGM 213
            ..::.....||.....:.:.||...:...:|:::...         .|:.|.|..|..|...:..
 Frog   145 GAVYSFDPVGSYQRDAYKAGGSASAMLQPLLDNQIGYKNMQNVEQLPLTLEKALKLIKDVFISAA 209

  Fly   214 KNDLCSGGKVSLCVVRCD 231
            :.|:.:|..:.:.:|..|
 Frog   210 ERDVYTGDALHISIVTKD 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta2R2NP_649515.3 PRE1 9..228 CDD:223711 40/208 (19%)
proteasome_beta_type_7 50..239 CDD:239732 39/206 (19%)
psmb1NP_988993.1 proteasome_beta_type_1 28..239 CDD:239726 42/213 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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