DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosbeta2R2 and psma6a

DIOPT Version :9

Sequence 1:NP_649515.3 Gene:Prosbeta2R2 / 40621 FlyBaseID:FBgn0037296 Length:322 Species:Drosophila melanogaster
Sequence 2:NP_705941.2 Gene:psma6a / 171585 ZFINID:ZDB-GENE-020326-1 Length:246 Species:Danio rerio


Alignment Length:220 Identity:45/220 - (20%)
Similarity:80/220 - (36%) Gaps:36/220 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 DRSPFLCGPSGFTFDNCLRNKQLKENGLEEPNSFTTGTTVVGIVFDGGVIIGAESRATSGGIVFS 77
            ||...:..|.|..:......|.:.:.||       |...|.|  .|..|:|  ..|.....::.|
Zfish    10 DRHITIFSPEGRLYQVEYAFKAINQGGL-------TSVAVRG--KDCAVVI--TQRKVPDKLLDS 63

  Fly    78 KTCRKIIELQANIFAAGAGTARDTKALVELTRAQLELHRMNTGFRKVPVCCANQMIRQLLFRFNG 142
            .|...:..:..||....:|...|:::.|:..|.:....:...|: ::||....:.|..:...:..
Zfish    64 STVTHLFRITENIGCVMSGMTADSRSQVQRARYEAANWKYKYGY-EIPVDMLCKRIADISQVYTQ 127

  Fly   143 N-----IDADMIIGGAD-NTGAHLFCTRSDGSTDTAPF------TSIGSGYQVSMSILESR---- 191
            |     :...||:.|.| ..|..::      ..|.|.:      |:.|.....:.|.||.:    
Zfish   128 NAEMRPLGCCMIVVGVDEELGPQVY------KCDPAGYYCGFKATAAGVKQTEATSFLEKKIKKK 186

  Fly   192 --WSEDLSEESACALACDAVAAGMK 214
              |:.|.:.|:|.:.....:|...|
Zfish   187 LDWTFDQTVETAISCLSTVLAIDFK 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta2R2NP_649515.3 PRE1 9..228 CDD:223711 45/220 (20%)
proteasome_beta_type_7 50..239 CDD:239732 37/183 (20%)
psma6aNP_705941.2 PRK03996 6..239 CDD:235192 45/220 (20%)
proteasome_alpha_type_6 8..220 CDD:239723 45/220 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.