DRSC/TRiP Functional Genomics Resources

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Protein Alignment cno and HDK

DIOPT Version :10

Sequence 1:NP_524232.2 Gene:cno / 40620 FlyBaseID:FBgn0259212 Length:2051 Species:Drosophila melanogaster
Sequence 2:NP_197547.1 Gene:HDK / 832169 AraportID:AT5G20470 Length:556 Species:Arabidopsis thaliana


Alignment Length:414 Identity:84/414 - (20%)
Similarity:134/414 - (32%) Gaps:129/414 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   571 LEGNLENETK-------SISSLKSGGSNSQDRSPKMTGSGILAGGGSGSGDTQGQEPILPAVLEF 628
            |...|||.|:       |:..|:...|||:.....:....:..     ||:|:            
plant   228 LATELENATRKADQLHESVQRLEEKLSNSESEIQVLRQQALAI-----SGETK------------ 275

  Fly   629 PETHQELFLRHIISELDVNVPHFKLAPVYSLYLCARYRASTHYRP-ELQPTERAHKLTMFLHHVA 692
             .|.:::.::.|...|..|..    .||.:   |..|:...|:|. ||:.|.       ....:.
plant   276 -TTPEDILVKCISQNLGYNGD----MPVAA---CVIYKCLLHWRSFELERTS-------VFDRII 325

  Fly   693 NLVYSVVQEQYTDPRILAFWMANSSEFLHFLKSDRHISAFSVQAQEVLAEAVQTAFRNLVNCFRL 757
            ..:.|.| |...|..:||:|::|.:....||              |.:..|.::|..|.:|....
plant   326 ETIGSAV-EVLEDNEVLAYWLSNLASLSLFL--------------EQIINAARSASTNDINGKFG 375

  Fly   758 ELSQTLNQFLSENIDHDSAAGLVLTVLGSAMALLRRCRVNAALTIQLFSQLFHYINVICFNTIVA 822
            |...|                             |:|                     |.:..:.
plant   376 ERKST-----------------------------RKC---------------------CSDCTLG 390

  Fly   823 NSQMCTGDWGKVMTERLQLLELWAERQGLELAADC--HLAKINQCAQFL---QAPKSSVEEIQQL 882
            ..|......|:.:...|..||.|......|.|...  .|..|.|...||   |.||.|:..|   
plant   391 KYQEKPKHNGEYVKAGLAELEQWCIEATDEYAGSAWDELRHIRQAVGFLVTYQKPKMSLAVI--- 452

  Fly   883 ACSCFRLNSLQMAALLQQEKLPRNLVDTAIRMAESVADELTRADGREVRLEESPE-LHLALLLPD 946
             .|.|.:.|:|     |..::..|..|.... ..||:.::. |:.|.:..|:|.. :..:.||.:
plant   453 -TSFFPVLSIQ-----QLYRISTNYWDEKYG-THSVSSDVI-ANMRVMMTEDSNNAVSSSFLLDE 509

  Fly   947 DGFSCDVVRGIPTGLVDFLNPLQQ 970
            |.       .||..:.|....::|
plant   510 DD-------SIPFTVGDITESMEQ 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cnoNP_524232.2 RA1_Afadin 20..130 CDD:340480
RA2_Afadin 257..347 CDD:340479
FHA 376..471 CDD:469597
Myo5p-like_CBD_afadin 631..941 CDD:271255 64/316 (20%)
PDZ_AFDN-like 1008..1096 CDD:467251
HDKNP_197547.1 Smc <43..>275 CDD:440809 12/51 (24%)
Myo5-like_CBD 280..517 CDD:470793 68/333 (20%)
Blue background indicates that the domain is not in the aligned region.

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