DRSC/TRiP Functional Genomics Resources

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Protein Alignment cno and Radil

DIOPT Version :9

Sequence 1:NP_001303494.1 Gene:cno / 40620 FlyBaseID:FBgn0259212 Length:2051 Species:Drosophila melanogaster
Sequence 2:XP_006504745.1 Gene:Radil / 231858 MGIID:2443088 Length:1122 Species:Mus musculus


Alignment Length:1196 Identity:244/1196 - (20%)
Similarity:396/1196 - (33%) Gaps:424/1196 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 LYTELPETSF--TRSISNPEAVMRRRRQQKLEKKL------QQFRSRD------GGPD------- 255
            ::.:.| |.|  |:.|.:|....:.:||.:|...:      .::|..|      |..|       
Mouse    23 IHEDAP-TMFYGTQLIMSPPTKNKLKRQSQLLSTMLSRTLSYKYRDLDSTFCSLGASDDPSELST 86

  Fly   256 ---TGGTLKIYGESLCQDVPYKTLLLSIRDCAQAVVREMLTKYGLEKADPLHYCLVQVNSDGTEY 317
               ..|.||::|:|:|....||::|.:....||.:|:|.|.:|.|   ||  .|..|       |
Mouse    87 QLSAPGVLKVFGDSVCTGTHYKSVLATGSSSAQELVKEALERYAL---DP--ECAGQ-------Y 139

  Fly   318 ILDDDECPLSILMNHPTSRGSIMFHVRRRPADSQPRRRKKKPLGAANGANHISGDREGPVLV-EV 381
            :|.|                     |..:..||..|.:.:        ...:.||.|.|:|: |:
Mouse   140 VLCD---------------------VVGQAGDSGQRWQAQ--------CFRVFGDNEKPLLIQEL 175

  Fly   382 THSGDG-GRRIKL--GSDPVEVGSANTNCLQLFGPSIQPRHCLISLLEGVCTVTPLHTDALTFVN 443
            ....:| .||.:|  .||..|:.|.:.:.... |.:.|.|.......:|        |.||| ..
Mouse   176 WKPREGLSRRFELRKKSDVEELASRDVDTTTA-GINAQARRLQRIRAKG--------TPALT-SE 230

  Fly   444 GHHISQPTILHNGSVVMFGRVASYRFLDSPTDGRYNLALSQSQLDSACLYESRSPTSP-GSWNDE 507
            ....|.||                         |....:|::.|       |.:|:.| .:...|
Mouse   231 AAQSSPPT-------------------------RLRRTVSETSL-------SPAPSLPEAAQRPE 263

  Fly   508 DGALSSTHKSDYD--H------HQQANHSSAY------H--NNNNNSSDHPLSSTLRDVVD---- 552
            :....:...|.|.  |      :.|.:.|..|      |  .....||...:|.:..|::.    
Mouse   264 EPVPEAMRYSLYQCPHLLLLQGYSQQHDSLVYVLSKERHTVGQRTPSSKPSISLSAPDILPLHCT 328

  Fly   553 -SKAGQDQGANSGN------YDGQSLEGNLENETKSISSLKSG---------------------- 588
             .:....:|..:|.      ..|.|:..|.....::...|:.|                      
Mouse   329 IRRHQSPEGGPAGTRLVLEPITGASVSVNFSEVGRNPVVLQHGDLLSLGLYYLLLFKDPGQAQPL 393

  Fly   589 --------GSNSQDRSPKMTGSGILAGGGSGSGDTQGQEPILPA--------VLEFPETHQELFL 637
                    |:..|  |.:|.|:.:.|.|.          |.|||        :|||....::..|
Mouse   394 PACALARLGAAPQ--SCRMCGAVLRARGA----------PSLPAAVVRRRSLLLEFEPDVEDTLL 446

  Fly   638 RHIISELDVNVPHFKLAPVYSLYLCARYRASTHYRPELQPTERAHKLTMFLHHVANLVYSVVQE- 701
            :.|::.::......||.|.:.|.||.::.| .|:    ||....|.|......|.:.|:...:| 
Mouse   447 QRIMTLIEPGGDDHKLTPAFLLCLCIQHSA-MHF----QPGTFRHLLLKISKRVRDTVWEKTKEL 506

  Fly   702 -----QYTDP---------------RILAFWMANSSEFLHFL--KSDRHISAF------------ 732
                 |..:|               :.:.|||:||.|.|:|:  ||..::.:.            
Mouse   507 AEKQAQLQEPISWASFPMADLVPDLQHILFWMSNSIELLYFIQQKSPLYVQSMEEELDVTGSKES 571

  Fly   733 --------SVQAQEVLAEAVQTAFRNLV----NCFRLELSQTLN--QFLSENIDH-DSAAGL--- 779
                    |.:|...|.|.|..||:..|    .|..:.|...|.  .|.:|..:. .|...|   
Mouse   572 LFSCTLTASEEAMAALEEVVLYAFQQCVYYLSKCLYVCLPALLECPPFQTERRESWRSGPALPEE 636

  Fly   780 ---VLTVLGSAMALLRRCRVNAALTIQLFSQLFHYINVICFNTIV--ANSQMCTGDW--GKVMTE 837
               |::|..:.:.||::.:::..:..|:.:.||.:...:..|.::  ..|..|. .|  |..:..
Mouse   637 LRRVVSVFQATLDLLQQLQMHPEVASQMLAYLFFFSGTLLLNQVLDKGPSLSCF-HWPRGVQVCA 700

  Fly   838 RLQLLELWAERQGLELAADCHLAKINQCAQFLQAPKSSVEEIQQLACSCFR-----LNSLQMAAL 897
            |||....||...||...|:....|::.....|..|::   ::.|::.:..|     ||..|:..|
Mouse   701 RLQQFLEWARSAGLGAPAERFFRKLSCTLHLLATPRA---QLIQMSWATLRVTFPALNPAQLHRL 762

  Fly   898 LQQEKLPRNLVDTAIRMAESVADELTRADGREV----RLEESPELHLALLLPDDGFSCDV----- 953
            |.|.:|       |..|....|.|....||.|.    .:.||.|....::||..||..|:     
Mouse   763 LTQYQL-------ASAMGPVSAWEPGAPDGPEAFQSEDILESYENPPPIVLPSQGFQVDLEADCV 820

  Fly   954 -----------------VRG-----------------------IPTGLVDFLNPLQQQGM----- 973
                             :||                       ||:.....|:....||:     
Mouse   821 EDSIYQHLLYIRHFLWGLRGQASPDSGPAQPESIEGAIMDTWAIPSSGPQRLSTFSSQGLYHTIP 885

  Fly   974 ---------------------------------------------------------------CR 975
                                                                           |.
Mouse   886 EGHLEGHGCPLANRDPGRVAVETAPPHSLPVTGAPRAQGPPGRQPTRGDRRGSQAGSLHTDSSCM 950

  Fly   976 LAAQPTSIGL------W---------TVYMHQFN---------------------ARSSSAMSNK 1004
            |....|.:||      |         .|...|.|                     |.:||..|:.
Mouse   951 LTPPSTPLGLEPAGPSWPEPSGLCGRAVLDGQRNGPGGLPGAVLEGDAIQDAEPPAEASSPSSSA 1015

  Fly  1005 LPQPELQLIKLHKNSNGMGLSIVAAKGAGQEKLGIYIKSVVPGGAADADGRLQAGDQLLRVDGQS 1069
            .....:.:::|.:..:|:|:.::..........|:||::::||..|.:||||..|||:|.|:|.|
Mouse  1016 EDFCYVFMVELERGPSGLGMGLIDGMHTPLGAQGLYIQTLLPGSPAASDGRLSLGDQILEVNGSS 1080

  Fly  1070 LIGITQERAADYLVRTGPVVSLEVAK 1095
            |.|::..||.|.:...|..:...|||
Mouse  1081 LRGVSYMRAVDLIRHGGKKMRFLVAK 1106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cnoNP_001303494.1 AF6_RA_repeat1 20..131 CDD:176377
AF6_RA_repeat2 257..346 CDD:176376 24/88 (27%)
FHA 398..461 CDD:278899 13/62 (21%)
Myo5p-like_CBD_afadin 631..941 CDD:271255 86/378 (23%)
DegQ <983..1112 CDD:223343 39/149 (26%)
PDZ 1009..1097 CDD:214570 29/87 (33%)
RadilXP_006504745.1 RA_Radil_like 79..190 CDD:340636 38/151 (25%)
FHA 302..372 CDD:366133 11/69 (16%)
Myo5p-like_CBD_Rasip1 440..807 CDD:271256 86/382 (23%)
PDZ_signaling 1021..1105 CDD:238492 26/83 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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