DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr16 and Cadm3

DIOPT Version :9

Sequence 1:NP_001287169.1 Gene:dpr16 / 40619 FlyBaseID:FBgn0037295 Length:488 Species:Drosophila melanogaster
Sequence 2:XP_006497123.3 Gene:Cadm3 / 94332 MGIID:2137858 Length:547 Species:Mus musculus


Alignment Length:597 Identity:126/597 - (21%)
Similarity:177/597 - (29%) Gaps:232/597 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 ERGAGGTPGGRGAGILAGSGRSPGTASILLAFLAAVSFRGMRAPLAATATPMENASLIASPATGT 77
            |:..|.|...||.|...|.|.                        ||:..|....| ..||....
Mouse     8 EKMEGTTKARRGCGRRGGVGN------------------------AASRPPRHQPS-PPSPPLHL 47

  Fly    78 STMGSAGSPVLMLGDDQQQQEYDTTVVDSWSDRPDTATLTKGFSIPSYLPPFPEF---------- 132
            ...|...:|.|:                     |.||..    ..||..||.|..          
Mouse    48 QPNGLLRAPYLI---------------------PATAAA----PAPSRYPPRPRAWKPLRGCPFG 87

  Fly   133 -------IPADLPHMLRNASS--GAAPPADIG-PSGSPM---------PSKPNEQSRLHAYDSEQ 178
                   .|...|...|.||:  |..|.:.:| ||..|:         |...|...  ..|..||
Mouse    88 QRRRLPRTPGPSPRRSRLASAQPGRWPGSAMGAPSALPLLLLLACSWAPGGANLSQ--DGYWQEQ 150

  Fly   179 KAQQLRREKEL---AKERELLPRRQLSLPPLNA-----------TVQAGQHAYLPCKLNQHSGKP 229
                   :.||   |...|.|.....|.|.|.|           ||.||....|.|::..|....
Mouse   151 -------DLELGTPAPLEEALSSTVWSNPDLLASQDSQPWTSDETVVAGGTVVLKCQVKDHEDSS 208

  Fly   230 LSWVR-------------LRDEHIIAVDHT----------------------TFINDARFASLL- 258
            |.|..             |||..|..|..|                      .|....|.|..| 
Mouse   209 LQWSNPAQQTLYFGEKRALRDNRIQLVSSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLV 273

  Fly   259 ------QSTTLTTLVSGGALSTTAT---------PVAAL----GNSFAHA-------VPGGQERG 297
                  |...:|...|......|||         |.|.|    |:...|.       .|.|:...
Mouse   274 TVLGIPQKPIITGYKSSLREKETATLNCQSSGSKPAAQLTWRKGDQELHGDQTRIQEDPNGKTFT 338

  Fly   298 NSSSLSWTLQIKYVNLEDAGW-------YECQLATEPKMSAKVQLFVITPRTELIGDRQRFVKAG 355
            .|||:|:     .|..||.|.       :|.....:...|.:::: :.|| |.:|.......:.|
Mouse   339 VSSSVSF-----QVTREDDGANIVCSVNHESLKGADRSTSQRIEV-LYTP-TAMIRPEPAHPREG 396

  Fly   356 SRVELHCIVRGTLEAPKYIFWYRGDQ---QVTAENEASGAQSGWYTQIDRNIFGSTEHNRNTIGS 417
            .::.|||..||.....:|::...|.:   ::|.|:                             :
Mouse   397 QKLLLHCEGRGNPVPQQYVWVKEGSEPPLKMTQES-----------------------------A 432

  Fly   418 LVIPLVRKIHSGNYTCEPENSAAASMQLHVLSGEYSA---------SAIKSTAARPHRLGHGYTS 473
            |:.|.:.|..||.|.|    :|.::|      |.|:|         |.:.|:::..|.:..|..:
Mouse   433 LIFPFLNKSDSGTYGC----TATSNM------GSYTAYFTLNVNDPSPVPSSSSTYHAIIGGIVA 487

  Fly   474 LHQWLIFLLVAL 485
               :::|||:.|
Mouse   488 ---FIVFLLLIL 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr16NP_001287169.1 IG_like 205..337 CDD:214653 44/211 (21%)
Ig <298..338 CDD:299845 10/46 (22%)
IG_like 352..447 CDD:214653 19/97 (20%)
Ig 358..439 CDD:143165 16/83 (19%)
Cadm3XP_006497123.3 Ig1_Necl-1 181..275 CDD:143290 19/93 (20%)
Ig2_Necl-1 296..378 CDD:143329 20/86 (23%)
IG 388..465 CDD:214652 22/115 (19%)
4.1m 503..518 CDD:128590
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 79 1.000 Inparanoid score I5205
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

Return to query results.
Submit another query.