DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr16 and dscama

DIOPT Version :9

Sequence 1:NP_001287169.1 Gene:dpr16 / 40619 FlyBaseID:FBgn0037295 Length:488 Species:Drosophila melanogaster
Sequence 2:XP_021334866.1 Gene:dscama / 568643 ZFINID:ZDB-GENE-050310-7 Length:2025 Species:Danio rerio


Alignment Length:383 Identity:85/383 - (22%)
Similarity:134/383 - (34%) Gaps:114/383 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 QKAQQLRREKELAKERELLPRRQ-----LSLP--PLNAT-----------VQAGQHAYLPCKLNQ 224
            ||..:|...:.:.:.|.....||     |.:|  |.|:.           |.|.....||||.:.
Zfish   187 QKEDELFNYRCMTRHRYTSETRQSNSARLFVPADPSNSAPAILDGFEKREVMASHRVELPCKASG 251

  Fly   225 HSGKPLSWVRLRDEHIIAVDHTTFINDARFASLLQSTTLTTLVSGGALSTTATPVAALGNSFAHA 289
            |......|::         ::....:|:||.   ||.| ..|:.....|.|.:.|..:.||:.:|
Zfish   252 HPAPKYRWLK---------NNRPLESDSRFR---QSVT-GLLIERAQPSDTGSYVCEVWNSYGNA 303

  Fly   290 ---------------VPGGQERGNSSS---------------LSW-----------TLQIKYVNL 313
                           |...:.:|:..|               |||           .:::..:|.
Zfish   304 EVIGRLTVKEPLKAVVSPRKVKGSVGSQVSLSCSVTGSDEFELSWYRNGDKINTGANIRMNGINK 368

  Fly   314 E----------DAGWYECQLATEPKMSAKVQLFVI----TPRTELIGDRQRFVKAGSRVELHCIV 364
            |          |.|.|:| .:.:.||||:..:.||    ||:. |....::.|.....|.|.|.|
Zfish   369 ENLVMDGMAKSDGGVYQC-FSRKAKMSAQDFVQVILEDGTPKI-LSAFSEKVVGPNDFVSLTCHV 431

  Fly   365 RGTLEAPKYIFWYRGDQQVTAENEASGAQSGWYTQIDRNIFGSTEHNRNTIGSLVIPLVRKIHSG 429
            :||.:..  |.|...|:.|..::.             ..|..|.....|.:..|.|..::...||
Zfish   432 KGTPQPA--ITWTLDDEVVAKDSR-------------HRIVHSITAEGNVVSYLNISHIQVRDSG 481

  Fly   430 NYTCEPENSA-AASMQLHV-LSGEYSASAIKSTAA--------RPHRLGHGYTSLHQW 477
            .|.|...||| ..|.|..: :.|......:|:..|        ..|.:|:.|.|: :|
Zfish   482 VYRCTCNNSAGTVSYQARINVRGSADIRPMKNLTAIAGWDMYIHCHVIGYPYYSI-KW 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr16NP_001287169.1 IG_like 205..337 CDD:214653 39/193 (20%)
Ig <298..338 CDD:299845 14/75 (19%)
IG_like 352..447 CDD:214653 25/95 (26%)
Ig 358..439 CDD:143165 20/80 (25%)
dscamaXP_021334866.1 Ig 124..217 CDD:325142 7/29 (24%)
I-set 236..311 CDD:254352 21/87 (24%)
IG_like 321..402 CDD:214653 15/81 (19%)
I-set 408..502 CDD:333254 27/109 (25%)
IGc2 524..579 CDD:197706 5/16 (31%)
Ig 614..679 CDD:319273
Ig_DSCAM 708..787 CDD:143211
Ig 805..898 CDD:325142
FN3 894..988 CDD:238020
FN3 995..1092 CDD:238020
fn3 1100..1186 CDD:306538
fn3 1199..1282 CDD:306538
Ig 1312..1377 CDD:319273
fn3 1405..1471 CDD:306538
FN3 1492..1563 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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