DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr16 and Dscaml1

DIOPT Version :9

Sequence 1:NP_001287169.1 Gene:dpr16 / 40619 FlyBaseID:FBgn0037295 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_001101611.1 Gene:Dscaml1 / 315615 RGDID:1304887 Length:2111 Species:Rattus norvegicus


Alignment Length:613 Identity:129/613 - (21%)
Similarity:204/613 - (33%) Gaps:179/613 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SPSGMSWRQRERGAGGTPGGRGAGILAGSG-----RSPGTASILLAFLAAV-SFRGMRAPLAATA 61
            :||...|.:.||       ||||.....:|     :.|.....|:.||..: |....|.....|:
  Rat    25 APSAGGWERAER-------GRGAAARPATGPPPRRKGPLYGMWLVTFLLLLDSLHKARPEDVGTS 82

  Fly    62 TPMENASLIASPATGTSTMG------SAGSP------VLMLGDD---------------QQQQEY 99
            ....|.||  ...|.:|::|      :||||      .|..|||               .|...:
  Rat    83 LYFVNDSL--QHVTFSSSVGVVVPCPAAGSPSAALRWYLATGDDIYDVPHIRHVHANGTLQLYPF 145

  Fly   100 DTTVVDSW---SD------------------------RPDTATLTKGFSIPSYLPPFPEFIPADL 137
            ..:..:|:   :|                        .|.|..:....|:...:..|...||:.:
  Rat   146 SPSAFNSFIHDNDYFCTAENAAGKIRSPNIRIKAVFREPYTVRVEDQRSMRGNVAVFKCLIPSSV 210

  Fly   138 PHMLRNASSGAAPPADIGPS--------GSPMPSKPNEQSRLHAYD--SEQKAQQLRREKELAKE 192
            ...: :..|.......|.|.        |....|...::..|..|.  ::.|.....|:...|:.
  Rat   211 QEYV-SVVSWEKDTVSITPENRFFITSHGGLYISDVQKEDALSTYRCITQHKYSGETRQSNGARL 274

  Fly   193 RELLPRRQLSLPPL-----NATVQAGQHAYLPCKLNQH---------SGKPL----SWVR----- 234
            ....|..  |:|.:     :..|..|....|||..:.:         .|:||    .|.:     
  Rat   275 SVTDPAE--SIPTILDGFHSQEVWTGHAVELPCAASGYPIPAIRWLKDGRPLPADSRWAKRITGL 337

  Fly   235 ----LRDEHIIAVDHTTFINDA--RFASLLQSTTLTTLVSGGALSTTATP---VAALGNS--FAH 288
                ||.|     |..|:|.:.  .|.|...:..||.:   ..|..|.||   ...:|::  .:.
  Rat   338 TISDLRTE-----DSGTYICEVTNTFGSAEANGVLTVI---DPLHVTLTPKKLKTGIGSTVILSC 394

  Fly   289 AVPGGQE--------------------RGNSSSLSWTLQIKYVNLEDAGWYECQLATEPKMSAKV 333
            |:.|..|                    ||.|:.   ||.|.......:|.|:| .||....:|:.
  Rat   395 ALTGSPEFTIRWYRNTELVLPGEAISIRGLSNE---TLLISSAQKSHSGAYQC-FATRKAQTAQD 455

  Fly   334 QLFVI----TPRTELIGDRQRFVKAGSRVELHCIVRGTLEAPKYIFWYRGDQQVTAENEASGAQS 394
            ...::    |||. :....::.|..|.:..|.|..:|.  .|..:.|...|:.|..:   ...::
  Rat   456 FAIIVLEDGTPRI-VSSFSEKVVNPGEQFSLMCAAKGA--PPPTVTWALDDEPVVRD---GSHRT 514

  Fly   395 GWYTQIDRNIFGSTEHNRNTIGSLVIPLVRKIHSGNYTCEPENS-AAASMQLHV-LSGEYSASAI 457
            ..||..|    |:|..:.|..|    |.:|  ..|.|.|...|| .:|..|..: :.|..|..|:
  Rat   515 NQYTMSD----GTTISHMNVTG----PQIR--DGGVYRCTARNSVGSAEYQARINVRGPPSIRAM 569

  Fly   458 KSTAARPHR--------LGHGYTSLHQW 477
            ::..|...|        :|:.|.|: :|
  Rat   570 RNITAVAGRDTLINCRVIGYPYYSI-KW 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr16NP_001287169.1 IG_like 205..337 CDD:214653 39/185 (21%)
Ig <298..338 CDD:299845 10/39 (26%)
IG_like 352..447 CDD:214653 25/95 (26%)
Ig 358..439 CDD:143165 21/81 (26%)
Dscaml1NP_001101611.1 IG 101..173 CDD:214652 11/71 (15%)
IGc2 101..168 CDD:197706 11/66 (17%)
Ig 183..276 CDD:299845 16/93 (17%)
IG_like 195..276 CDD:214653 13/81 (16%)
I-set 291..369 CDD:254352 18/82 (22%)
IGc2 298..359 CDD:197706 14/65 (22%)
IGc2 386..447 CDD:197706 13/64 (20%)
I-set 466..560 CDD:254352 27/109 (25%)
Ig 466..556 CDD:299845 26/105 (25%)
IGc2 577..635 CDD:197706 5/21 (24%)
IG_like 665..744 CDD:214653
Ig 673..739 CDD:143165
I-set 748..843 CDD:254352
Ig7_DSCAM 765..843 CDD:143211
I-set 849..942 CDD:254352
Ig 861..949 CDD:299845
FN3 945..1039 CDD:238020
FN3 1046..1143 CDD:238020
fn3 1151..1237 CDD:278470
FN3 1249..1340 CDD:238020
IGc2 1364..1428 CDD:197706
FN3 1442..1532 CDD:238020
FN3 1546..1618 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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