DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr16 and Lsamp

DIOPT Version :10

Sequence 1:NP_001287169.1 Gene:dpr16 / 40619 FlyBaseID:FBgn0037295 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_001401926.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:358 Identity:72/358 - (20%)
Similarity:116/358 - (32%) Gaps:124/358 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 PRRQLSLPPL-----------------NATVQAGQHAYLPCKLNQHSGKPLSW------------ 232
            |..:::|.|:                 |.||:.|..|.|.|.:...:.| ::|            
  Rat    30 PPAEVNLSPITIPGLPVRSVDFNRGTDNITVRQGDTAILRCVVEDKNSK-VAWLNRSGIIFAGHD 93

  Fly   233 -------VRLRDEHI----IAVDHTTFINDARFASLLQ--------------------------- 259
                   |.|...|.    :.:......::..:...:|                           
  Rat    94 KWSLDPRVELEKRHALEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISSDV 158

  Fly   260 ------STTLTTLVSGGALSTTATPVAALGNSFAHAVPGGQERGNSSSLSWTLQIKYVNLEDAGW 318
                  :.||..:.:|     ...||.    ::.|..|.|:|.......   |:|..:..|.:|.
  Rat   159 TVNEGSNVTLVCMANG-----RPEPVI----TWRHLTPLGREFEGEEEY---LEILGITREQSGK 211

  Fly   319 YECQLATEPKMSAKVQLFVIT---PRTELIGDRQRFVKAGSRVELHCIVRGTLEAPKYIFWYRGD 380
            |||:.|.|.. ||.|:...:|   |.| :...:......|.:..|.| ....:.||.: .|||.|
  Rat   212 YECKAANEVS-SADVKQVKVTVNYPPT-ITESKSNEATTGRQASLKC-EASAVPAPDF-EWYRDD 272

  Fly   381 QQVTAENEASGAQSGWYTQIDRNIFGSTEHNRNTIGSLVIPLVRKIHSGNYTCEPENSAAASMQL 445
            .::   |.|:|.:           ..|||..    .||.:..|.:.|.|||||...|..      
  Rat   273 TRI---NSANGLE-----------IKSTEGQ----SSLTVTNVTEEHYGNYTCVAANKL------ 313

  Fly   446 HVLSGEYSASAI---KSTAARPHRLGHGYTSLH 475
                |..:||.:   :.....||.:....|::|
  Rat   314 ----GVTNASLVLFKRVLPTVPHPIQEIGTTVH 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr16NP_001287169.1 IG_like 352..447 CDD:214653 25/94 (27%)
Ig strand B 358..362 CDD:409353 1/3 (33%)
Ig strand C 373..377 CDD:409353 0/3 (0%)
Ig strand E 416..420 CDD:409353 2/3 (67%)
Ig strand F 430..435 CDD:409353 4/4 (100%)
LsampNP_001401926.1 Ig 55..145 CDD:472250 13/90 (14%)
Ig strand B 66..70 CDD:409382 2/3 (67%)
Ig strand C 78..82 CDD:409382 1/4 (25%)
Ig strand E 111..115 CDD:409382 0/3 (0%)
Ig strand F 125..130 CDD:409382 0/4 (0%)
Ig strand G 138..141 CDD:409382 0/2 (0%)
Ig_3 148..218 CDD:464046 16/81 (20%)
Ig_3 235..311 CDD:464046 26/96 (27%)

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