DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr16 and Cadm4

DIOPT Version :9

Sequence 1:NP_001287169.1 Gene:dpr16 / 40619 FlyBaseID:FBgn0037295 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_694752.1 Gene:Cadm4 / 260299 MGIID:2449088 Length:388 Species:Mus musculus


Alignment Length:349 Identity:77/349 - (22%)
Similarity:121/349 - (34%) Gaps:109/349 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 NATVQAGQHAYLPCKLNQHSGKPLSWVRLRDEHIIAVDH----TTFIN----------------- 250
            |.||..|..|.:.|:|:|:.|.           |:.:.:    |.|.|                 
Mouse    31 NVTVAEGGVAEITCRLHQYDGS-----------IVVIQNPARQTLFFNGTRALKDERFQLEEFSP 84

  Fly   251 --------DAR-------FASLL------QSTTLTTLVS--------------GG-----ALSTT 275
                    |||       |..|.      |..|||.||:              ||     .|...
Mouse    85 RRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTVLVAPENPVVEVREQAVEGGEVELSCLVPR 149

  Fly   276 ATPVAAL----GNSFAHAVPGGQERGNSSSLSWTLQIKYVNLEDAGWYECQLATE--PKMSAKVQ 334
            :.|.|.|    .......|..|||.|...|::.|::.:....:|.|...|:...:  |...:|..
Mouse   150 SRPAAVLRWYRDRKELKGVSSGQENGKVWSVASTVRFRVDRKDDGGIVICEAQNQALPSGHSKQT 214

  Fly   335 LFVITPR---TELIGDRQRFVKAGSRVELHCIVRGTLEAPKYIFWYRGDQQVTAENEASGAQSGW 396
            .:|:..:   |..|...|..|:.|..:.|.|.|.|. ..|..|.|.||::.:....||.|.    
Mouse   215 QYVLDV
QYSPTARIHASQAVVREGDTLVLTCAVTGN-PRPNQIRWNRGNESLPERAEAVGE---- 274

  Fly   397 YTQIDRNIFGSTEHNRNTIGSLVIPLVRKIHSGNYTCEPENSAAASMQLHVLSGEYSASAIKSTA 461
                                :|.:|.:....:|.||||..|....:..|:||......:.:::..
Mouse   275 --------------------TLTLPGLVSADNGTYTCEAANKHGHARALYVLVVYDPGAVVEAQT 319

  Fly   462 ARPHRLGHGYTSLHQWLIFLLVAL 485
            :.|:.:..|..:|   |:||::.:
Mouse   320 SVPYAIVGGILAL---LVFLIICV 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr16NP_001287169.1 IG_like 205..337 CDD:214653 42/196 (21%)
Ig <298..338 CDD:299845 7/41 (17%)
IG_like 352..447 CDD:214653 23/94 (24%)
Ig 358..439 CDD:143165 20/80 (25%)
Cadm4NP_694752.1 Ig 29..120 CDD:386229 21/99 (21%)
Ig 140..220 CDD:386229 17/79 (22%)
IGc2 237..298 CDD:197706 21/85 (25%)
4.1m 344..362 CDD:128590
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 79 1.000 Inparanoid score I5205
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

Return to query results.
Submit another query.