DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabGGTa and rabggta

DIOPT Version :10

Sequence 1:NP_649512.1 Gene:RabGGTa / 40617 FlyBaseID:FBgn0037293 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_001070131.2 Gene:rabggta / 767725 ZFINID:ZDB-GENE-060929-1042 Length:580 Species:Danio rerio


Alignment Length:557 Identity:191/557 - (34%)
Similarity:259/557 - (46%) Gaps:103/557 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHGRVKVRTTEEERERKKKEQALKVRAYRAAMGRIQKKREAGELDNEMLSLTVQILLRNPDVSML 65
            |||||||:||.::.|.|:||:..|::|:..|...:.|||.|||.|.|.|.||.|:|..|||.:.|
Zfish     1 MHGRVKVKTTAQQEEEKRKEREKKLKAFVCARDSVLKKRSAGEHDEEALDLTQQLLSSNPDFATL 65

  Fly    66 WNIRRECVLEKLFRLKEEEATCETPSEEKPEKENQTGENKPSEKKAAGEDKAHSIFTCELDLTEQ 130
            ||.||| ||..|..|:|                               :|:...::..||...|.
Zfish    66 WNYRRE-VLLHLETLRE-------------------------------KDEVQKLYESELHFIEA 98

  Fly   131 CLMVNPKSYNAWHHRCWTLEQNPRADWQQEVKLCNKYLKFDERNFHTWDYRRYVTGKAMVPATQE 195
            ||.||||||..||||.|...:.|:.||.:|:.||::.|..||||||.|||||.|..::.|...||
Zfish    99 CLKVNPKSYGCWHHRSWVNTRLPQPDWTRELGLCDRCLSLDERNFHCWDYRRLVVKESGVSVEQE 163

  Fly   196 LDFCTEKIRANFSNYSSWHHRSLLLPELYPN-----------------QQRDRPMSEEKLQKELE 243
            |.|....|.:|||||||||:||.|||:|.|.                 |.....:.||:|.||.|
Zfish   164 LQFTDRLIGSNFSNYSSWHYRSTLLPQLRPQPVLDSAHNTSPSPSASPQSHSHRVCEEQLLKEYE 228

  Fly   244 MVLTAAFTDPNDSSAWFYQRWLLGSGAQLDRAPRIAAFRLESHG--AVLALDKP-YPDIKQLKTE 305
            :...|.||||||.|||||.|||||   :.:|...|:...:...|  ..:|..|| :.....|...
Zfish   229 LAHNAFFTDPNDQSAWFYYRWLLG---RAEREEMISCVYVSREGERVSVAFSKPVHAGSVGLMLV 290

  Fly   306 LVGGGQTILLEFWLPVDKRGTSWKCQQNFDYQRNSAYSLRLSDQKVDLSPLSGSENGAYYIAPPH 370
            |.|..|.:......|..:....|.|    |....|            :|..|...|...:....|
Zfish   291 LDGQPQQVQWRNAHPRLRHSPVWLC----DLPAGS------------ISDTSNEHNLTIHWTDKH 339

  Fly   371 GTTSCS---------------------KDLLAE----LQTQLQSCLDLLEFEPDSKWTLLTSALL 410
            ....|:                     .:|..|    ||.:||||..||:.||.:||.|||..||
Zfish   340 THRDCALYTGCAESWCRDSATDQELFRSELSVEKSSVLQAELQSCNQLLDLEPQNKWCLLTIILL 404

  Fly   411 MRAIDFSANHETSLAHLAKLEKVDFLREGYYKDLAARWTLEWELAKWPQSADFPKRFDIANAVLL 475
            |||:|...:.:.:|.|...|::||.:|..||.||.:::.:|..:.|...:.  .:.|.::|..|.
Zfish   405 MRALDPLGHEKETLTHFQTLKEVDAMRSSYYSDLCSKFLIENTILKMEYAE--VRVFSLSNKKLT 467

  Fly   476 ESLPYDQYLVIADEITLPNKLRDKLGESVPKTFADLK 512
            .....||.|::.......|:|     :.:|..|:.|:
Zfish   468 TLCHLDQLLLVTHINLSSNQL-----QHLPPQFSMLQ 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabGGTaNP_649512.1 BET4 21..>267 CDD:227823 110/262 (42%)
rabggtaNP_001070131.2 BET4 38..>252 CDD:227823 106/245 (43%)
RabGGT_insert 259..359 CDD:462239 19/115 (17%)
LRR 359..>569 CDD:443914 46/148 (31%)
leucine-rich repeat 456..474 CDD:275378 3/17 (18%)
leucine-rich repeat 475..500 CDD:275378 6/30 (20%)
leucine-rich repeat 501..522 CDD:275378
leucine-rich repeat 523..547 CDD:275378
Blue background indicates that the domain is not in the aligned region.

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