DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabGGTa and Rabggta

DIOPT Version :10

Sequence 1:NP_649512.1 Gene:RabGGTa / 40617 FlyBaseID:FBgn0037293 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_062392.1 Gene:Rabggta / 56187 MGIID:1860443 Length:567 Species:Mus musculus


Alignment Length:555 Identity:194/555 - (34%)
Similarity:270/555 - (48%) Gaps:112/555 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHGRVKVRTTEEERERKKKEQALKVRAYRAAMGRIQKKREAGELDNEMLSLTVQILLRNPDVSML 65
            ||||:||:|:||:.|.|:.|:..|::.|::|...:.:||||||||..:|.||.|||..|||.:.|
Mouse     1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKREAGELDESVLELTSQILGANPDFATL 65

  Fly    66 WNIRRECVLEKLFRLKEEEATCETPSEEKPEKENQTGENKPSEKKAAGEDKAHSIFTCELDLTEQ 130
            ||.||| ||::|                         |.:.|.::.|...||      ||...|.
Mouse    66 WNCRRE-VLQQL-------------------------ETQKSPEELAALVKA------ELGFLES 98

  Fly   131 CLMVNPKSYNAWHHRCWTLEQNPRADWQQEVKLCNKYLKFDERNFHTWDYRRYVTGKAMVPATQE 195
            ||.||||||..||||||.|.:.|..:|.:|::||.::|:.||||||.|||||:|..:|.|...:|
Mouse    99 CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163

  Fly   196 LDFCTEKIRANFSNYSSWHHRSLLLPELYPNQQRDRP---MSEEKLQKELEMVLTAAFTDPNDSS 257
            |.|....|..|||||||||:||.|||:|:| |....|   :.|..|.:|||:|..|.||||||.|
Mouse   164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHP-QPDSGPQGRLPENVLLRELELVQNAFFTDPNDQS 227

  Fly   258 AWFYQRWLLGSGAQLDRAPRIAAFRLESHGAVLAL-------------DKPYPDIKQLKTELVGG 309
            ||||.|||||              |.|.|..:..|             .:|.....::.|.|:..
Mouse   228 AWFYHRWLLG--------------RAEPHDVLCCLHVSREEACLSVCFSRPLIVGSKMGTLLLTV 278

  Fly   310 GQTILLEFWLPVDKRGTS---WKCQQNFDYQRNS------AYSLRL----SDQKVDLSPLSGSEN 361
            .:..|...|...|.|...   |.|    |....|      .::.|:    ||.:.:...|.|   
Mouse   279 DEAPLSVEWRTPDGRNRPSHVWLC----DLPAASLNDHLPQHTFRVIWTGSDTQKECVLLKG--- 336

  Fly   362 GAYYIAPPHGTTSCSKDLLAE--------------LQTQLQSCLDLLEFEPDSKWTLLTSALLMR 412
                    |....|......|              ||::|:||.:|.|.||::||.|||..||||
Mouse   337 --------HQECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 393

  Fly   413 AIDFSANHETSLAHLAKLEKVDFLREGYYKDLAARWTLEWELAKWPQSADFPKRFDIANAVLLES 477
            |:|.....:.:|.:.:.|:.||.:|..|..||.:::.:|..:.|. :.||. :...:|:..|...
Mouse   394 ALDPLLYEKETLEYFSTLKAVDPMRAAYLDDLRSKFLVENSVLKM-EYADV-RVLHLAHKDLTVL 456

  Fly   478 LPYDQYLVIADEITLPNKLRDKLGESVPKTFADLK 512
            ...:|.|::.......|:||     ::|...|.|:
Mouse   457 CHLEQLLLVTHLDLSHNRLR-----ALPPALAALR 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabGGTaNP_649512.1 BET4 21..>267 CDD:227823 115/248 (46%)
RabggtaNP_062392.1 BET4 1..>237 CDD:227823 127/268 (47%)
PFTA 1 44..78 20/59 (34%)
PFTA 2 88..122 20/39 (51%)
PFTA 3 124..158 18/33 (55%)
PFTA 4 159..193 19/33 (58%)
PFTA 5 207..241 23/47 (49%)
RabGGT_insert 247..346 CDD:462239 19/113 (17%)
PFTA 6 363..397 19/33 (58%)
LRR 1 442..463 4/21 (19%)
leucine-rich repeat 443..461 CDD:275378 2/18 (11%)
PPP1R42 <444..555 CDD:455733 10/48 (21%)
leucine-rich repeat 462..487 CDD:275378 7/30 (23%)
LRR 2 464..486 5/26 (19%)
LRR 3 487..508 194/555 (35%)
leucine-rich repeat 488..509 CDD:275378
LRR 4 509..530
leucine-rich repeat 510..534 CDD:275378
LRR 5 534..555
Blue background indicates that the domain is not in the aligned region.

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