DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc6 and Ube2d1

DIOPT Version :10

Sequence 1:NP_524230.2 Gene:Ubc6 / 40610 FlyBaseID:FBgn0004436 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_001102000.1 Gene:Ube2d1 / 361831 RGDID:1307886 Length:147 Species:Rattus norvegicus


Alignment Length:138 Identity:58/138 - (42%)
Similarity:88/138 - (63%) Gaps:0/138 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPT 69
            |.:|:.::...||.|||...|..|..:::..|.|.|.||.|:.::.|.|.||:.|..:||.|||.
  Rat     2 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPK 66

  Fly    70 VRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENR 134
            :.|.:|::|||:.::|.||||||:::|||...||.:|.||.|||.||||:.|.....||:||.::
  Rat    67 IAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDK 131

  Fly   135 REYEKRVK 142
            .:|.:..:
  Rat   132 EKYNRHAR 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc6NP_524230.2 UBCc_UBE2A_2B 3..145 CDD:467410 58/138 (42%)
Ube2d1NP_001102000.1 UBCc_UBE2D 3..145 CDD:467412 57/137 (42%)

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