DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc6 and ube2d4

DIOPT Version :9

Sequence 1:NP_001246916.1 Gene:Ubc6 / 40610 FlyBaseID:FBgn0004436 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_001082922.1 Gene:ube2d4 / 100001914 ZFINID:ZDB-GENE-070424-86 Length:147 Species:Danio rerio


Alignment Length:135 Identity:61/135 - (45%)
Similarity:86/135 - (63%) Gaps:0/135 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPT 69
            |.:|:.::...||.|||...|..|...::..|.|.|.||:|:|::.|.|.|||.|..:||.|||.
Zfish     2 ALKRIQKELTDLQRDPPAQCSAGPVGEDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPK 66

  Fly    70 VRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENR 134
            |.|.:|::|||:.::|.||||||:::|||...||.:|.||.|||.||||:.|.....|..||.:|
Zfish    67 VAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADR 131

  Fly   135 REYEK 139
            .:|.:
Zfish   132 EKYNR 136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc6NP_001246916.1 UQ_con 8..145 CDD:395127 60/132 (45%)
ube2d4NP_001082922.1 UBCc 1..146 CDD:412187 61/135 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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