DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdep and Farp2

DIOPT Version :9

Sequence 1:NP_001097685.2 Gene:Cdep / 40608 FlyBaseID:FBgn0265082 Length:4273 Species:Drosophila melanogaster
Sequence 2:NP_001101703.1 Gene:Farp2 / 316639 RGDID:1308003 Length:1060 Species:Rattus norvegicus


Alignment Length:1031 Identity:287/1031 - (27%)
Similarity:449/1031 - (43%) Gaps:269/1031 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 PVGGGLPGGRMTHSLST--PSGVDGTPSTPRHRGGKKLTVRIQMLDDSITMFQVQAKALGRVLFE 96
            |..|...||:....:||  |..........:|     :.:|:::||.::.:|.::.|..|:||..
  Rat    12 PTSGTRLGGQTAIGVSTLEPEQALSPKMQEKH-----MHIRVKLLDSTVEIFDIEPKCDGQVLLT 71

  Fly    97 QVCRQLNLLEADYFGLEYQEVSTHTKYWLDLE--KPMNRQVGLSLIDPVLRFCIKFYTPDPAQLE 159
            ||.:.|||:|.||||||::.|.:   ||:.||  ||:.|||.... :.|||..:||:.|||.||:
  Rat    72 QVWKHLNLIECDYFGLEFKNVQS---YWIWLEPMKPIIRQVRKPK-NAVLRLAVKFFPPDPGQLQ 132

  Fly   160 EEYTRYLFCLQIKRDLATGSLQCNDNTAALMASYIVQASCGDFVPEDYPDHTYLSSYRFVPNQDA 224
            ||||||||.||::|||....|.|...|:||:.|:::|:..||:  ::..|..:|.:..::|||:.
  Rat   133 EEYTRYLFALQLRRDLLEERLTCTATTSALLISHLLQSEIGDY--DETLDREHLKANDYLPNQEQ 195

  Fly   225 TMQRKIMENHKKHVGQSPAEADLNLLETARRCELYGMKMHPAKDVEGVPLNLAVAHMGITVFQNI 289
            ::. ||::.|::|.||:||::|..:||.||:.|:||::.|.|.|.||..:||||:|||:.|||..
  Rat   196 SLD-KILDFHQRHTGQTPADSDFQVLEIARKLEMYGIRFHMASDREGTKINLAVSHMGVLVFQGT 259

  Fly   290 TRINTFSWAKIRKISFKRKRFLVKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCTA 354
            |:||||:|:|:||:||||||||:|||||.:|.|:||:||....|:|||||||.|||:|.|||.:.
  Rat   260 TKINTFNWSKVRKLSFKRKRFLIKLHPEVHGPYQDTLEFLLGSRDECKNFWKICVEHHTFFRLSD 324

  Fly   355 VQNTPRRKTRVLSRGSSFRYSGKTQKQIIEFVRENYVKRQNFQRSQSFRQGPLNASSRSQSHTYV 419
             |..|:.|....||||||||||:||||:::::|:...||..::|..|        .:|:..||  
  Rat   325 -QPKPKAKAVFFSRGSSFRYSGRTQKQLVDYIRDGGTKRIPYERRHS--------KTRTSLHT-- 378

  Fly   420 NSSISANPLLPIDTAAWDYRNQCSDSMTPSLTKKAADTLDRRRDNPIGHMRSQVTAAQVEIYQTK 484
                                      :|..|.|::....|..|.:      :.:::|....|...
  Rat   379 --------------------------LTGDLPKQSISFTDGLRTS------ASLSSANASFYPPP 411

  Fly   485 NYAADSP--TSQEEAECSAAGAERQHHSAVAMDKLNSNRSLSPQGPQSWTSPSHSSHHQQRGPDP 547
            . :..||  .|.:::..|....:..|..:.|.::  |:|..|.:||.     :.|:|.    |.|
  Rat   412 T-SLSSPGLPSVKDSSSSPVDPQAPHIKSTAAER--SSRPSSSEGPS-----TQSAHL----PGP 464

  Fly   548 ARVHPGDHNTGLSHLSHLYSSSTPRRVSVGSQAFVPASPQLISINTPSSSTNHNTMHSTSTVVRS 612
            ..:.||                         ..|...|||      ||.|:      ..|.:..|
  Rat   465 PVLQPG-------------------------PGFSVDSPQ------PSPSS------LKSRLSLS 492

  Fly   613 VDLNSSMELEEEAEDP---------GTA--DTEEEEGEPVGEEEEEELVEEEVDS-------DLT 659
            .:..:|:...|:...|         |||  |.:||:......|:|...:.:|:.:       ||.
  Rat   493 PERQASLSTAEQGSSPVLSPVLSGTGTARMDNQEEQKHKHTSEDEAYFIAKEIVATERTYLKDLE 557

  Fly   660 AST-------INRETMGAASAAAASASALGSGLASAHRPQLRSQESQ-SLTATPVHYSSTNYSMS 716
            ..|       |..|.|.||......::.  ..:...||..|...|.: :|...|   ||.::...
  Rat   558 VITVWFRSVVIKEEAMPAALMTLLFSNI--DPIYEFHRGFLHEVEQRLALWEGP---SSGDHQRI 617

  Fly   717 KQCMLNN------------------------------ANANSTETETDNIIYTDIND-------- 743
            ...:|.|                              ..|...|.|...:.|..:|.        
  Rat   618 GDILLRNMRQLKEFTSYFQRHDEVLTELEKATKHCKRLEAVYKEFELQKVCYLPLNTFLLKPVQR 682

  Fly   744 MGHYK----------------YPDFHS--------SAHQEHKISNSEHL-NLNE-RNDIYATVN- 781
            :.||:                |.|.|.        :...:..::..|:| .|.| :.|:....| 
  Rat   683 LVHYRLLLNRLCTHYSPEHEDYTDCHEALKAITEVTTELQQSLTRLENLQKLTELQRDLVGVENL 747

  Fly   782 --------------RKAKSKIREKHFSDEFIDQSILQYTRAKQMGLSQVPV--------LLQQPS 824
                          :..|..::::.|   |:...:|.||.....|.||..:        :|.:.|
  Rat   748 IAPGREFIREGCLHKLTKKGLQQRMF---FLFSDMLLYTSKSVTGASQFRIRGFLPLRGMLVEDS 809

  Fly   825 TSAYAA-------ALQERSYNSGS-----YQYHNDLNHPSESSSSS------YFGTGFGTKRYGQ 871
            .:.::.       |.|:....:.|     .::..|||...:::.|:      ..|....|:....
  Rat   810 ENEWSVPHCFTIYAAQKTIVVAASTRLEKEKWMQDLNAAIQAAKSAGDTPAVLLGGPVYTRSPRS 874

  Fly   872 SERTKLAQSEN--YLTPSLDSQS------------------SRHTHSLPRNSELSG 907
            |:...|..||:  ....||:..|                  ||..||....::|||
  Rat   875 SDEVSLEDSEDGRGTRGSLEGNSQHRANTTMHVCWYRNTSVSRADHSAAVENQLSG 930

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CdepNP_001097685.2 B41 70..264 CDD:214604 83/195 (43%)
FERM_N 73..134 CDD:286467 26/62 (42%)
FERM_B-lobe 163..256 CDD:271216 37/92 (40%)
FERM_C_FARP1-like 251..372 CDD:270014 71/120 (59%)
FA 364..406 CDD:285894 19/41 (46%)
Farp2NP_001101703.1 B41 45..234 CDD:214604 83/195 (43%)
FERM_C_FARP1-like 221..341 CDD:270014 71/120 (59%)
FA 333..375 CDD:400882 20/49 (41%)
RhoGEF 539..718 CDD:238091 29/183 (16%)
PH1_FARP1-like 747..853 CDD:269928 17/108 (16%)
PH2_FARP1-like 924..1021 CDD:270055 3/7 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 129 1.000 Domainoid score I5119
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H8877
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45402
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45858
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.010

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