DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdep and Frmd7

DIOPT Version :9

Sequence 1:NP_001097685.2 Gene:Cdep / 40608 FlyBaseID:FBgn0265082 Length:4273 Species:Drosophila melanogaster
Sequence 2:XP_017457893.2 Gene:Frmd7 / 302826 RGDID:1562057 Length:748 Species:Rattus norvegicus


Alignment Length:867 Identity:256/867 - (29%)
Similarity:379/867 - (43%) Gaps:213/867 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 KKLTVRIQMLDDSITMFQVQAKALGRVLFEQVCRQLNLLEADYFGLEYQEVSTHTKYWLDLEKPM 131
            :.|.:::|.||||..:|.|..|:.|:.||...|..|||.|.:|||||:...|.| ..||:|.||:
  Rat    45 RMLHLKVQFLDDSQKIFVVDQKSSGKALFNLSCSHLNLAEKEYFGLEFCSHSGH-NVWLELLKPI 108

  Fly   132 NRQVGLSLIDP---VLRFCIKFYTPDPAQLEEEYTRYLFCLQIKRDLATGSLQCNDNTAALMASY 193
            .:||.    :|   |.:|.:||:..||..|.||.|||||.||||:|||.|.|.|:||..|||.|:
  Rat   109 TKQVK----NPKEVVFKFIVKFFPVDPGHLREELTRYLFTLQIKKDLALGRLPCSDNCTALMVSH 169

  Fly   194 IVQASCGDFVPEDYPDHTYLSSYRFVPNQDATMQRKIMENHKKHVGQSPAEADLNLLETARRCEL 258
            |:|:..|||..|....|  |...:::|:| |.::.|||:.|::|:|:||||:|:.||:.||:.::
  Rat   170 ILQSELGDFHEEMVRKH--LVQTQYLPSQ-ACLESKIMQFHQQHIGRSPAESDILLLDIARKLDM 231

  Fly   259 YGMKMHPAKDVEGVPLNLAVAHMGITVFQNITRINTFSWAKIRKISFKRKRFLVKLHPEGYGYYK 323
            ||::..||.|.||:.::|||||||:.|.:..|:||||:||||||:|||||.||:|||.......|
  Rat   232 YGIRPQPASDGEGMQIHLAVAHMGVLVLRGNTKINTFNWAKIRKLSFKRKHFLIKLHANILVLCK 296

  Fly   324 DTVEFFFEGRNECKNFWKKCVENHGFFRCTAVQNTPRRKTRVL--SRGSSFRYSGKTQKQIIEFV 386
            ||:||....|:.||.|||.|||.|.|||   :...|:.|.:.|  |:||||||||:||:|::|:.
  Rat   297 DTLEFTMASRDACKAFWKTCVEYHAFFR---LSEEPKSKPKTLLCSKGSSFRYSGRTQRQLLEYG 358

  Fly   387 RENYVKRQNFQRSQSFRQGPLNASSRS-QSHTYVNSSISAN-PLLPIDTAAWDYRN----QCSDS 445
            ::..:|...|:|    :|.|.....|. :|...:.|.:|.. ..|.:...:..|||    ..|:.
  Rat   359 KKGRLKSLPFER----KQYPSQYHERQCRSSPDILSDVSKQVEDLRLTYGSSYYRNVNGVHASEP 419

  Fly   446 MTPSLTKKAADTLDRRRDNPIGHMRSQVTAAQVEIYQTKNYAADSPTSQEEAECSAAGAERQHHS 510
            |           ||.||.|           :.||:    .:||:...|:.|||.::.     |.|
  Rat   420 M-----------LDGRRRN-----------SAVEV----TFAAELEHSKPEAEAASL-----HPS 453

  Fly   511 AVAMDKLNSNRSLSPQGPQSWTSPSHSSHHQQRGPDPARVHPGDHNTGLSHL--------SHLYS 567
                 :.:|:.:.....|...|.|......::|.|             ||..        .|...
  Rat   454 -----QSSSSFTFIYADPVFNTDPEPIDFFEERSP-------------LSSFQTNSKFVDGHTSK 500

  Fly   568 SSTPRRVSVGSQAFVPASPQLISINTPSSSTNHNTMHSTSTVVRSVDL-----NSSMELEEEAED 627
            .|..|:::.....::|.:.|.:.|..|.             |...||.     ..|:.:.||:..
  Rat   501 VSPARQLTYTDVPYIPCTSQKVDIMPPQ-------------VFFYVDKPPQVPRRSLMMAEESMR 552

  Fly   628 PGTADTEEEEGEPVGEEEEEELVEEEVDSDLTASTINRETMGAASAAAASASALGSGLASAHRPQ 692
            |                      :..||                              .||.:|.
  Rat   553 P----------------------DSYVD------------------------------PSAIKPA 565

  Fly   693 LRSQESQSLTATPVHYSSTNYSMSKQCMLNNANANSTETE---TDNIIYT----------DINDM 744
            .||..:..:.:..........:|::....:|.|....|.:   .|...|.          ..:||
  Rat   566 KRSPRNMRIKSLQQDLQELQEAMARTSGRSNINVEPEEEDPHLDDAFAYNLQEQTPKRSQSQSDM 630

  Fly   745 GHYKYPDFHSSAHQEHKISNSEHL------NLNERNDIYATVNRKAKSKIREKHFSDEFIDQSIL 803
            ...::|            ..||..      .|..:.|::...       ..|:.|....:|||..
  Rat   631 KTIRFP------------FGSEFRPLGPCPALTRKTDLFTCT-------FAEQEFPTVLMDQSSA 676

  Fly   804 QYTRAKQMGLSQVPVL------LQQPSTSAYAAALQERSYNSGSYQYHNDLNHPSESSSSSYFGT 862
            :...|.:...|:..:|      |....|.:..|.::   .:|||.|    |....|:.|      
  Rat   677 ERYVASESSDSESEILKTDYYSLYGKGTKSPRARIR---LSSGSLQ----LEEEDEAIS------ 728

  Fly   863 GFGTKRYGQSERTKLAQSENYL 884
             |||.  |..:||.|.....:|
  Rat   729 -FGTP--GAEDRTLLKPCNYFL 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CdepNP_001097685.2 B41 70..264 CDD:214604 89/196 (45%)
FERM_N 73..134 CDD:286467 28/60 (47%)
FERM_B-lobe 163..256 CDD:271216 47/92 (51%)
FERM_C_FARP1-like 251..372 CDD:270014 62/122 (51%)
FA 364..406 CDD:285894 18/43 (42%)
Frmd7XP_017457893.2 FERM_F1_FRMD7 46..131 CDD:340708 36/89 (40%)
FERM_B-lobe 139..229 CDD:271216 47/92 (51%)
FERM_C_FARP1-like 224..344 CDD:270014 62/122 (51%)
FA 339..375 CDD:400882 17/39 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 120 1.000 Domainoid score I5608
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45402
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45858
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.010

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