DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdep and Farp2

DIOPT Version :9

Sequence 1:NP_001097685.2 Gene:Cdep / 40608 FlyBaseID:FBgn0265082 Length:4273 Species:Drosophila melanogaster
Sequence 2:NP_663494.2 Gene:Farp2 / 227377 MGIID:2385126 Length:1065 Species:Mus musculus


Alignment Length:1242 Identity:330/1242 - (26%)
Similarity:525/1242 - (42%) Gaps:314/1242 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 PVGGGLPGGRMTHSLSTPSGVDGTPSTPRHRGGKKLTVRIQMLDDSITMFQVQAKALGRVLFEQV 98
            |..|...||:....:||   ::...|.......|.:.:|:::||.::.:|.::.|..|:||..||
Mouse    12 PTSGTRLGGQTAIGVST---LEPEQSLSPRMQEKHMRIRVKLLDSTVELFDIEPKCDGQVLLTQV 73

  Fly    99 CRQLNLLEADYFGLEYQEVSTHTKYWLDLE--KPMNRQVGLSLIDPVLRFCIKFYTPDPAQLEEE 161
            .:.|||:|.||||||::.|.:   ||:.||  ||:.|||.... :.|||..:||:.|||.||:||
Mouse    74 WKHLNLIECDYFGLEFKNVQS---YWIWLEPMKPIIRQVRKPK-NAVLRLAVKFFPPDPGQLQEE 134

  Fly   162 YTRYLFCLQIKRDLATGSLQCNDNTAALMASYIVQASCGDFVPEDYPDHTYLSSYRFVPNQDATM 226
            ||||||.||:||||....|.|..|||||:.|:::|:..||:  ::..|..:|.:..::|||:.::
Mouse   135 YTRYLFALQLKRDLLEERLTCTANTAALLISHLLQSEIGDY--DETLDREHLKANEYLPNQEKSL 197

  Fly   227 QRKIMENHKKHVGQSPAEADLNLLETARRCELYGMKMHPAKDVEGVPLNLAVAHMGITVFQNITR 291
            : ||::.|::|.||:|||:|..:||.||:.|:||::.|.|.|.||..:||||:|||:.|||..|:
Mouse   198 E-KILDFHQRHTGQTPAESDFQVLEIARKLEMYGIRFHMASDREGTKINLAVSHMGVLVFQGTTK 261

  Fly   292 INTFSWAKIRKISFKRKRFLVKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCTAVQ 356
            ||||:|:|:||:||||||||:|||||.:|.|:||:||....|:|||||||.|||.|.|||.:. |
Mouse   262 INTFNWSKVRKLSFKRKRFLIKLHPEVHGPYQDTLEFLLGSRDECKNFWKICVEYHTFFRLSD-Q 325

  Fly   357 NTPRRKTRVLSRGSSFRYSGKTQKQIIEFVRENYVKRQNFQRSQSFRQGPLNASSRSQSHTYVNS 421
            ..|:.|....||||||||||:||||::::|::..:||..::|..|        .:|:..|     
Mouse   326 PKPKAKAVFFSRGSSFRYSGRTQKQLVDYVKDGGMKRIPYERRHS--------KTRTSLH----- 377

  Fly   422 SISANPLLPIDTAAWDYRNQCSDSMTPSLTKKAADTLDRRRDNPIGHMRSQVTAAQVEIYQTKNY 486
                                   ::|..|.|::....|..|.:      :.:::|.|..|...:.
Mouse   378 -----------------------ALTVDLPKQSVSFTDGLRTS------ASLSSANVSFYPPPSS 413

  Fly   487 AADSPTSQEEAECSAAGAERQHHSAVAMDKLNSNRSLSPQGPQSWTSPSHSSHHQQRGPDPARVH 551
            :...|......:.|::..:.|   |..:....:.||   .||.|...||..|.|.   |.|..:.
Mouse   414 SLSPPGLPNLKDSSSSLVDPQ---APVIKSTAAERS---SGPSSSDGPSTQSAHL---PGPPVLR 469

  Fly   552 PGDHNTGLSHLSHLYSSSTPRRVSVGSQAFVPASPQLISINTPSSSTNHNTMHSTSTVVRSVDLN 616
            ||                         ..|...|||    .:|||..:|.::        ..:|.
Mouse   470 PG-------------------------PGFSMDSPQ----PSPSSLKSHLSL--------CPELQ 497

  Fly   617 SSMELEEEAEDP---------GTA--DTEEEEGEPVGEEEEEELVEEEVDS-------DLTAST- 662
            :::...|:...|         |||  |.:||:......|:|...:.:|:.:       ||...| 
Mouse   498 AALSTAEQGASPVLSPVLSGAGTARMDNQEEQKHKHMPEDEAYFIAKEILATERTYLKDLEVITV 562

  Fly   663 ------INRETMGAASAAAASAS-------------------ALGSGLASAH------------- 689
                  |..|.|.||..|...::                   ||..|.:|||             
Mouse   563 WFRSVLIKEEAMPAALMALLFSNIDPVYEFHRGFLHEVEQRLALWEGPSSAHLKGDHQRIGDILL 627

  Fly   690 RPQLRSQESQSLTATPVHYSSTNYSMSKQCMLNNANANSTETETDNIIYTDINDM---------- 744
            |...:.:|..|.........:.....:|.|  ....|...|.|...:.|..:|..          
Mouse   628 RNMRQLKEFTSYFQRHDEVLTELEKATKHC--KKLEAVYKEFELQKVCYLPLNTFLLKPVQRLVH 690

  Fly   745 --------------GHYKYPDFHS--------SAHQEHKISNSEHL-NLNE-RNDIYATVNRKAK 785
                          ||..|.|.|.        :...:..::..|:| .|.| :.|:....|..|.
Mouse   691 YRLLLSRLCAHYSPGHRDYADCHEALKAITEVTTELQQSLTRLENLQKLTELQRDLVGVENLIAP 755

  Fly   786 SKIREKHFSDEFIDQSILQYTRAKQMGLSQVPVLLQQPSTSAYAAALQERSYNSGSYQYHNDLNH 850
            .:        |||.:..|.....|                     .||:|.:    :.:.:.|.:
Mouse   756 GR--------EFIREGCLHKLTKK---------------------GLQQRMF----FLFSDMLLY 787

  Fly   851 PSES-SSSSYFG-TGFGTKRYGQSERTKLAQSEN-YLTP-SLDSQSSRHTHSLPRNSELSGVDSV 911
            .|:| :.:|:|. .||...|     ...:.:||| :..| .....:::.|..:..::.|.....:
Mouse   788 TSKSVTGASHFRIRGFLPLR-----GMLVEESENEWSVPHCFTIYAAQKTIVVAASTRLEKEKWM 847

  Fly   912 DSYDSHYITHHSVGILPPGHLSSSSEKLDFQLPSGNLYSTTQFVKPEDASAHYMEDEEEEEEDEG 976
            ...::......::|..||            .|..|.:|:.|    |..:     ::...||.::|
Mouse   848 QDLNAAIQAAKTIGDSPP------------VLLGGPVYTRT----PRSS-----DEVSLEESEDG 891

  Fly   977 ENIYDQVERDSWLKSSSCKDLFERYSSTYYDR-EHSKPMTAFD--------KEFLSSN---RIDS 1029
            ......:|.:|..::::...:. .|.:|...| :||   .|.:        ::|.:||   ::..
Mouse   892 RGNRGSLEGNSQHRANTTMHVC-WYRNTSVSRADHS---AAVENQLSGYLLRKFKNSNGWQKLWV 952

  Fly  1030 PVTRYDDSRHSLYVAKNHSIDAHQGFSPLPQSKVYSSSYPGSTYNTQEHKRQHGHHMDYSGSQDD 1094
            ..|.:     .|:..|.|..|     .||       :|.|...|:....:.....|.||      
Mouse   953 VFTNF-----CLFFYKTHQDD-----YPL-------ASLPLLGYSVSLPREADSIHKDY------ 994

  Fly  1095 ISQDSYELLEKYDIDFFGGRGRSE-------DHMRSCSLDSGNYIPSDDESVSEGHQQHKYRSEM 1152
                .::|..|..:.||  |..|:       |.::..|..     |....|.::....|....|.
Mouse   995 ----VFKLQFKSHVYFF--RAESKYTFERWMDVIKRASSS-----PGRPPSFTQDCSHHSPGLEA 1048

  Fly  1153 DVKSKSA 1159
            :::.|.|
Mouse  1049 EIREKEA 1055

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CdepNP_001097685.2 B41 70..264 CDD:214604 87/195 (45%)
FERM_N 73..134 CDD:286467 26/62 (42%)
FERM_B-lobe 163..256 CDD:271216 41/92 (45%)
FERM_C_FARP1-like 251..372 CDD:270014 71/120 (59%)
FA 364..406 CDD:285894 19/41 (46%)
Farp2NP_663494.2 B41 45..234 CDD:214604 87/195 (45%)
FERM_N 48..111 CDD:286467 29/65 (45%)
FERM_M 131..234 CDD:278785 48/105 (46%)
FERM_C_FARP1-like 221..341 CDD:270014 71/120 (59%)
FA 333..375 CDD:285894 20/49 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 406..489 25/120 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 504..534 8/29 (28%)
RhoGEF 540..723 CDD:238091 31/184 (17%)
PH1_FARP1-like 752..859 CDD:269928 23/144 (16%)
PH 760..854 CDD:278594 20/123 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 874..902 6/36 (17%)
PH2_FARP1-like 929..1026 CDD:270055 23/125 (18%)
PH 934..1027 CDD:278594 23/121 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 128 1.000 Domainoid score I5289
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H8877
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4985
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm43331
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45858
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5540
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.990

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