DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdep and farp2

DIOPT Version :9

Sequence 1:NP_001097685.2 Gene:Cdep / 40608 FlyBaseID:FBgn0265082 Length:4273 Species:Drosophila melanogaster
Sequence 2:XP_031758599.1 Gene:farp2 / 100492283 XenbaseID:XB-GENE-988647 Length:1340 Species:Xenopus tropicalis


Alignment Length:1493 Identity:363/1493 - (24%)
Similarity:574/1493 - (38%) Gaps:423/1493 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 PGGRMTHSLSTPSGVDGTPSTPRHRGGKKLTVRIQMLDDSITMFQVQAKALGRVLFEQVCRQLNL 104
            ||..::.:.||      :|.:..|..    ...:.:||.|....::..|..|:.|..|:...||:
 Frog    31 PGQNLSTAFST------SPKSQNHES----YTNVLLLDSSTLPLEIGPKTTGQALLSQLFTHLNV 85

  Fly   105 LEADYFGLEYQEVSTHTKYWLDLEKPMNRQVGLSLIDP---VLRFCIKFYTPDPAQLEEEYTRYL 166
            :|.||||:|:|...... .||:..|.:|:|    |..|   .||..:||:.|||.||:|||||||
 Frog    86 VETDYFGIEFQTAQAQW-VWLEPLKSVNKQ----LRKPKNAKLRLAVKFFPPDPGQLQEEYTRYL 145

  Fly   167 FCLQIKRDLATGSLQCNDNTAALMASYIVQASCGDF---VPEDYPDHTYLSSYRFVPNQDATMQR 228
            |.|||||||....|.|.|:|.||:.|.::|:..||:   |.:|:..:||     :|..|. :::.
 Frog   146 FALQIKRDLEEEKLVCFDSTTALLISLLLQSEIGDYDQKVVQDHLQNTY-----YVQRQH-SLED 204

  Fly   229 KIMENHKKHVGQSPAEADLNLLETARRCELYGMKMHPAKDVEGVPLNLAVAHMGITVFQNITRIN 293
            :||:.|::|:|.||.:||..:||.|||.:|||.:.|.|.|.||..:||:|:|||:.|||..|:||
 Frog   205 RIMKYHQQHIGMSPGDADFQILEIARRLDLYGTRFHLASDREGAKINLSVSHMGVLVFQGSTKIN 269

  Fly   294 TFSWAKIRKISFKRKRFLVKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCTAVQNT 358
            ||:|:||||:||||:|||:|||||.:|.|:|.:||....|:.||.|||.|||.|.|||   :|:.
 Frog   270 TFNWSKIRKLSFKRRRFLIKLHPEVHGPYQDALEFLLPSRDTCKRFWKICVEYHSFFR---LQDE 331

  Fly   359 PRRKTR--VLSRGSSFRYSGKTQKQIIEFVRENYVKRQNFQRSQS-FRQGPLNA--SSRSQSHTY 418
            |:.|::  :|||||||||||:||||:|:::|::.:||.:::|..| .|..|..|  ....|..|:
 Frog   332 PKPKSKPVLLSRGSSFRYSGRTQKQLIDYMRDSSIKRPSYERRHSKARVSPCTAIPDPPKQILTF 396

  Fly   419 VNSSISANPLLPIDTAAWDYRNQCSDSMTPSLTKKAADTLDRRRDNPIGHMRSQVTAAQVEIYQT 483
            ..|..:..|                 |.:|              :.|: |..|.:|....:....
 Frog   397 AESLKTPLP-----------------SSSP--------------NQPL-HSFSSITVPSPQKNMP 429

  Fly   484 KNYAADSPTSQEEAECSAA-GAERQHHSAVAMDKLNSNRSLSPQGPQSWTSPSHSSHHQQRGPDP 547
            :|....|...|||....|| .:....|:::.        .|||.     ..||.||.....|...
 Frog   430 RNDEIMSSRPQEEPVRKAAEDSTLPVHASLP--------GLSPH-----PIPSLSSEQDSEGIRD 481

  Fly   548 ARVHPGDHNTGLSHLSHLYSSSTPRRVSVGSQAFVPASPQLISINTPSSSTNHNTMHSTSTVVRS 612
            ....|.:.|..:             .||..|..|:|..                           
 Frog   482 TDNDPQNENVRI-------------WVSGVSDPFLPTE--------------------------- 506

  Fly   613 VDLNSSMELEEEAEDP------GTADTEEEEGEPVGEEEEEEL-----VEEEVDSDLTASTINRE 666
                     |...:||      |.|:..:..|:.:...:|:.|     ::||.:||...:  :|.
 Frog   507 ---------EYIDDDPADISFGGGAELYDYGGDMLPSVDEDHLTQEYYLKEEDESDFNGN--SRP 560

  Fly   667 T-MGAASAAAASASALGSGLASAHRPQLRSQESQSLTATPVHYSSTNYSMSKQCMLNNANANSTE 730
            | ........|.||.:.|.|:.:....|....|:|  ::.:|:.|.:.|:|              
 Frog   561 TDASELFQVKAQASLMQSLLSPSESSSLLQHRSES--SSLLHHRSESSSLS-------------- 609

  Fly   731 TETDNIIYTDINDMGHYKYPDFHSSAHQEHKISNSEHLNLNERNDIYATVNRKAKSKIREKHFSD 795
                     ::|.|     |.|..||:  |..::|             .:|..|.|...|...:.
 Frog   610 ---------NLNGM-----PPFSRSAN--HSTASS-------------MINFPACSVRSESSSAF 645

  Fly   796 EFIDQSILQYTRAKQMGLSQVPVLLQQPSTSAYAAALQERSYNSGS--------------YQYHN 846
            :|.|.            |.|:..|...|:|:..:::....|::|..              ..||.
 Frog   646 QFGDI------------LDQLEQLSYPPTTTEDSSSSNGDSWDSDGEPPLDINLFFSNPLTNYHA 698

  Fly   847 DLNHPSESSSSSYFGTGFGTKRYGQSERTKLAQSENYLTPSLDSQSSRHTHSLPRNSELSGVDSV 911
            :||.         ||.   ..:.|||:  .|.:.:.||                  ..|.|    
 Frog   699 NLNQ---------FGV---PDKKGQSD--PLVKHDKYL------------------MVLKG---- 727

  Fly   912 DSYDSHYITHHSVGILPPGHLSSSSEKLD-FQLPSGNLYSTTQFV--KPEDASAHYMEDEEEEEE 973
                      :|.|           |.|. |.:|...:.:.|:.|  .|.|:....:.....:..
 Frog   728 ----------YSFG-----------EYLQYFNIPGCFVSTATRIVNTSPTDSEYFLVYRPPVQAV 771

  Fly   974 DEGENIYDQVERDSWLKSSSCKDLFERYSSTYYDREHSKPMTAFDKEFLSSNRIDSPV------- 1031
            ..|.....|...|.|.         .|.|...|...|.: .|..|...:...|: |||       
 Frog   772 SRGGGTVPQTGNDFWQ---------ARCSIAGYQYFHGE-QTPEDTSLMWGCRL-SPVTLRLPDL 825

  Fly  1032 ------------------TRYDDSRH---------SLYVAKN-------------------HSID 1050
                              ||.||:.:         :.|:.|.                   |.:.
 Frog   826 NMPCGSSPLLSPALSDTGTRADDAEYCTEKKPMDEAYYIVKEILSTETSHLKDIEVISVWLHKLL 890

  Fly  1051 AHQGFSPLPQSKVYSSSYPGSTYNTQEHKRQHGHHMDYSGSQDDISQDSYELLEKYDIDFFGGRG 1115
            :..|....|..::....:.......|.||                  |..:.||...|.:.|...
 Frog   891 SKGGLLVGPAEQLMKPLFSNMAPMQQFHK------------------DFLQQLEDVVILWEGRFS 937

  Fly  1116 RSEDHMRSCSLDSGNYIPSDDESVSEGHQQHKYRSE---MDVKSKS----AADIMNEIWDAEDPR 1173
            .::|......|...|.      :|......|.:|.|   ::::.||    ..|:..:.::.:...
 Frog   938 HAKDTQIIGDLMLRNI------TVLRALLPHLHRLEDVFLELQRKSPGQQEVDVFLQEFEQQRVC 996

  Fly  1174 YLPREKLSVK--SDGNFYKKIQEALVR--TSSLESQSEMFETKISRSSDSSKKSRDSLYHTDSKK 1234
            |||...|.:|  .....|:|:.|.|.|  ..|....:.. :..::.:|..|.:.|..|.|..:.:
 Frog   997 YLPLSCLLLKPLQRPLQYEKLLERLCRHYPPSHHDYNNC-QRALAEASAVSSRLRHRLLHLQNLQ 1060

  Fly  1235 SRETTKSKTSVASSQDSKESLVGDCFGRNYEMPTTTGKKVKQFTKKELYEKFAQSSQESKSDYYD 1299
            ..:           |..::.|.||..       ::.|   ::|.::....|..:|..:.:..|  
 Frog  1061 RLD-----------QLQRDLLGGDHL-------SSPG---REFIREGCLYKLTKSGLQQRMFY-- 1102

  Fly  1300 AVETGLEHTPEGLYSRPKVKSH------DCLLSDTHSSTANS-SFYDSRDTYSTFPSNKTHKTSK 1357
            .....|.:|.:||....:.:.|      ..|..|::||..:. :.|.::.|.....|::......
 Frog  1103 LFSDMLIYTRKGLSCTNQFRVHGRLPLYGMLAEDSYSSVPHCFTIYSAQTTIGVAASSQLDMRRW 1167

  Fly  1358 VHSISLQNVEIERNAKSFGSKSPESVSTP---ASGKR---------C--REKDIQTGDSLDQM 1406
            :..:   |..|.| |..:...|.:|:..|   :||:.         |  |.:.:...|.|..|
 Frog  1168 LDDL---NAAISR-APRYSELSAQSLQQPIITSSGESHYPNTLSHVCWYRNQSVSLADHLTMM 1226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CdepNP_001097685.2 B41 70..264 CDD:214604 80/199 (40%)
FERM_N 73..134 CDD:286467 20/60 (33%)
FERM_B-lobe 163..256 CDD:271216 41/95 (43%)
FERM_C_FARP1-like 251..372 CDD:270014 69/122 (57%)
FA 364..406 CDD:285894 22/44 (50%)
farp2XP_031758599.1 B41 54..240 CDD:214604 80/196 (41%)
FERM_C_FARP1-like 227..347 CDD:270014 69/122 (57%)
FA 339..381 CDD:400882 22/41 (54%)
RhoGEF 862..1049 CDD:238091 36/211 (17%)
PH1_FARP1-like 1078..1178 CDD:269928 20/108 (19%)
PH2_FARP1-like 1226..1320 CDD:270055 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 120 1.000 Domainoid score I5678
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48480
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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