DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdep and farp1

DIOPT Version :9

Sequence 1:NP_001097685.2 Gene:Cdep / 40608 FlyBaseID:FBgn0265082 Length:4273 Species:Drosophila melanogaster
Sequence 2:XP_017211441.1 Gene:farp1 / 100329707 ZFINID:ZDB-GENE-070424-163 Length:1041 Species:Danio rerio


Alignment Length:1153 Identity:318/1153 - (27%)
Similarity:489/1153 - (42%) Gaps:269/1153 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 VGGGLPGGRMTHSLSTPSGVDGTPSTPRHRGGKKLTVRIQMLDDSITMFQVQAKALGRVLFEQVC 99
            |.|...|...:..:||.......|:.|   .|:::::|:|||||:..:|:|..:|.|:.||:.||
Zfish    10 VAGQRLGAPESLGISTLEPGQRPPTMP---PGRQISIRVQMLDDTQEVFEVSQRAPGKALFDLVC 71

  Fly   100 RQLNLLEADYFGLEYQEVSTHTKYWLDLEKPMNRQVGLSLIDPVLRFCIKFYTPDPAQLEEEYTR 164
            ..|||:|.||||||:|: ......||||.||:.:|:.... :.:|||.:||:.||..||.||.||
Zfish    72 SHLNLVEGDYFGLEFQD-QRKMIVWLDLLKPILKQIRRPK-NIILRFVVKFFPPDHTQLLEELTR 134

  Fly   165 YLFCLQIKRDLATGSLQCNDNTAALMASYIVQASCGDFVPEDYPDHTYLSSYRFVPNQDATMQRK 229
            |||.||||.|||.|.|.||:::|||:.::|||:..|||  ::.....:|.:.:::|.|| |:..|
Zfish   135 YLFALQIKHDLACGRLTCNESSAALLVAHIVQSEIGDF--DEVQCKQHLLNNKYIPEQD-TLMDK 196

  Fly   230 IMENHKKHVGQSPAEADLNLLETARRCELYGMKMHPAKDVEGVPLNLAVAHMGITVFQNITRINT 294
            |:..|:|||||:|||:|..|||.|||.|:||:::|||||.||..|:|||||.|:.|||..|:||.
Zfish   197 IIGYHRKHVGQTPAESDYQLLEIARRLEMYGVRLHPAKDREGTRLSLAVAHSGVLVFQGHTKINA 261

  Fly   295 FSWAKIRKISFKRKRFLVKLHPE-GYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCTAVQNT 358
            |:|:|:||:||||||||:||.|: .....:||:||....|:.||.|||.|||.|.|||... :..
Zfish   262 FNWSKVRKLSFKRKRFLIKLRPDLNQSNCQDTLEFMMGSRDCCKVFWKICVEYHAFFRLFE-EPK 325

  Fly   359 PRRKTRVLSRGSSFRYSGKTQKQIIEFVRENYVKRQNFQRSQSFRQGPLNASSRSQSHTYVNSSI 423
            |:.|..:.:||||||:||:||:|:|::|::...|:..|:|..          |:.||    ||::
Zfish   326 PKPKPVLFTRGSSFRFSGRTQRQVIDYVKDTEFKKVPFERKH----------SKIQS----NSNL 376

  Fly   424 SANPLLPIDTAAWDYRNQCSDSMTPSLTKKAADTLDRRRDNPIGHMRSQVTAAQVEIY------- 481
            |..|           ..|.::.....|.:.|:.: ..:.|:|:|  |:|||.....:.       
Zfish   377 SPFP-----------SRQSAEGQGEMLQRNASAS-GHQADSPLG--RTQVTVENPALQRYTGSLN 427

  Fly   482 -QT---KNYAAD--------SPTSQEEAECSAAGAERQHHSAVAMDKLNSNRSLSPQGPQSWTSP 534
             ||   :|..:|        ||:.|:....|...|.   |||......:...|.||...|...:.
Zfish   428 SQTNGCRNGTSDEADARLKPSPSKQQAEHLSTGLAS---HSAKGPVSRSPQHSESPSAGQMMVNG 489

  Fly   535 SHSSHHQQRGPDPARVHPGDHNTGLSHLSH--LYSSSTPR----------RVSVGSQAFVPASPQ 587
            ...|....:.||..:..|         |:.  ||.:...|          |.......|:  :.:
Zfish   490 QKQSLSVGQSPDGRQPSP---------LTSPLLYDAGFIRADDEDEVRRKRFPTDKAYFI--AKE 543

  Fly   588 LISINTPSSSTNHNTMHSTSTVVRSVDLNSSMELEEEAEDPGTADTEEEEGEPVG-------EEE 645
            |:        |...|......|: :|....:: |::||......:......|||.       ::.
Zfish   544 LL--------TTERTYLKDLEVI-TVSFQKAV-LKDEAMPDSLRNLIFANFEPVYKFHETFLKDV 598

  Fly   646 EEELVEEEVDSDLTASTINRETMGAASAAAASASALGSGLASAHRPQLRSQESQSLTATPVHYSS 710
            |:.|.:.|..|:..... :.:.:|...........|.|.....|...|...|....::..:....
Zfish   599 EQRLAQWEGRSNAHIKG-DYQRVGDVMLKNIQGLKLLSSHLQKHSESLLELEQSCRSSRRLEVLC 662

  Fly   711 TNYSMSKQCMLNNANANSTETETDNIIY-TDINDMGHYK---------YP----DFHSS------ 755
            .::.:.|.|.|           ..||.: ..::.:.|||         ||    ||..|      
Zfish   663 RDFELQKVCYL-----------PLNIFFLRPLHRLLHYKQILERLCKHYPPTHDDFRDSRAALAD 716

  Fly   756 ----AHQEH----KISNSEHLNLNERNDIYATVNRKAK----------SKIREKHFSDE--FIDQ 800
                ..|.|    |:.|.:.| |..:.|:....:..|.          ||:..|.....  |:..
Zfish   717 VSELVLQLHTTLMKMENFQKL-LELKKDLVGIDSLAAPGREFIRLGCLSKLSGKGLQQRMFFLFS 780

  Fly   801 SILQYTRAKQMGLSQVPVLLQQPSTSAYAAALQERSYNSGSYQYHNDLNHPSESSSSSYFGTGFG 865
            .::.||.......:|..|..|.|   .|...::|                     |...:|..:.
Zfish   781 DVVMYTSRGLTASNQFKVHGQLP---LYGMTIRE---------------------SEDEWGVPYS 821

  Fly   866 TKRYGQSERTKLAQSENYLTPSLDSQSSRHTHSLPRNSELSGVDSVDSYDSHYITHHSVGILPPG 930
            ...:||.:...:|.|.       .|:..:....:....||:              ..|.|  |..
Zfish   822 FTLFGQRQSVVVAASS-------ASEMEKWIEDIRMAIELA--------------DKSNG--PTT 863

  Fly   931 HLSSSSEKLDFQLPSGNLYSTTQFVKPEDASAHYMEDEEEEEEDEGENIYDQVERDS-------- 987
            .:.|||            :|.::  .|||.||      ::|.||:..:....:||.:        
Zfish   864 EILSSS------------FSDSK--SPEDCSA------DQESEDDLSSSRSSLERQTPHRGNTTV 908

  Fly   988 ---WLKSSSCKDLFERYSSTYYDREHSKPMTAFDKEFLSSNRIDSPVTR-YDDSR--HSLYVA-K 1045
               |.:|:|                    ::..|......|::...:.| :.:|.  ..|:|. .
Zfish   909 HVCWHRSTS--------------------VSMVDFSVALENQLSGNLLRKFKNSNGWQKLWVVFT 953

  Fly  1046 NHSI---DAHQGFSPLPQSKV--YSSSYPGSTYNTQEHKRQHGHHMDY 1088
            |.|:   ..||...||....:  ||.:.|..:.|.         |.||
Zfish   954 NFSLFFYKTHQDEYPLASLPLLGYSITIPSESENI---------HKDY 992

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CdepNP_001097685.2 B41 70..264 CDD:214604 94/193 (49%)
FERM_N 73..134 CDD:286467 30/60 (50%)
FERM_B-lobe 163..256 CDD:271216 47/92 (51%)
FERM_C_FARP1-like 251..372 CDD:270014 65/121 (54%)
FA 364..406 CDD:285894 16/41 (39%)
farp1XP_017211441.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 124 1.000 Domainoid score I5462
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm24630
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45858
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5540
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.040

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