DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gnf1 and EMB1968

DIOPT Version :10

Sequence 1:NP_001014605.1 Gene:Gnf1 / 40607 FlyBaseID:FBgn0004913 Length:1008 Species:Drosophila melanogaster
Sequence 2:NP_001185061.1 Gene:EMB1968 / 838771 AraportID:AT1G21690 Length:341 Species:Arabidopsis thaliana


Alignment Length:369 Identity:83/369 - (22%)
Similarity:144/369 - (39%) Gaps:96/369 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   423 WVDKHKPTSIKEIVGQAGAASNVTNHNLKLKAKQERVKVLHYFNFPRLMNWLSKWYVNHDGNKKP 487
            ||:|::|..:|::..|......:||             .|...:.|.::                
plant    11 WVEKYRPKQVKDVAHQEEVVRVLTN-------------TLQTADCPHML---------------- 46

  Fly   488 QRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKEL-GFD-----AVEFNASDTRSKRLLKD 546
                         ||      ||||.||||||..:..:| |.:     .:|.||||.|...:::.
plant    47 -------------FY------GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 92

  Fly   547 EVSTLL-----SNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPII 606
            ::....     ||...|||     ...|.| ::|:||.|.|..:......:.:....|.:....|
plant    93 KIKDFAAVAVGSNHRQSGY-----PCPSFK-IIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 151

  Fly   607 CMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQS 671
            |....|   .|..|.:.|...||:....|.:..:|:.||.:|.:.:....:..:.:.:..|:|::
plant   152 CNYISR---IIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRA 213

  Fly   672 INHIALLSAKEDASQKSGQQVATKDL----KLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYSL 732
            |.::      :.|::..|..:.:.||    .:.|.|||.|:|||.:......|:|.         
plant   214 ITYL------QSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIANKE--------- 263

  Fly   733 APLFVQQNY--LQVLPQGNKKDVLAKVAATADALSLGDLVEKRI 774
            ....|.:.|  .|::.|      |..:.|.||: .:.|:.:.:|
plant   264 VDNIVAEGYPASQIINQ------LFDIVAEADS-DITDMQKAKI 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gnf1NP_001014605.1 PTZ00121 <12..434 CDD:173412 4/10 (40%)
BRCT_RFC1 232..310 CDD:349383
PRK04195 421..969 CDD:235250 83/369 (22%)
RFC1 764..917 CDD:462507 2/11 (18%)
EMB1968NP_001185061.1 rfc 10..308 CDD:234763 83/369 (22%)
Blue background indicates that the domain is not in the aligned region.

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