DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gnf1 and RFC5

DIOPT Version :10

Sequence 1:NP_001014605.1 Gene:Gnf1 / 40607 FlyBaseID:FBgn0004913 Length:1008 Species:Drosophila melanogaster
Sequence 2:NP_031396.1 Gene:RFC5 / 5985 HGNCID:9973 Length:340 Species:Homo sapiens


Alignment Length:412 Identity:79/412 - (19%)
Similarity:155/412 - (37%) Gaps:118/412 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   392 LKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVDKHKPTSIKEIVGQAGAASNVTNHNLKLKAKQ 456
            ||.:::|::.|               :..:.||:|::|.::.:::......|.:..         
Human     6 LKQQEQPAATK---------------IRNLPWVEKYRPQTLNDLISHQDILSTIQK--------- 46

  Fly   457 ERVKVLHYFNFPRLMNWLSKWYVNHDGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATL 521
                                 ::|.|     :.|:             .||.||||.|||:|...
Human    47 ---------------------FINED-----RLPH-------------LLLYGPPGTGKTSTILA 72

  Fly   522 VVKEL------GFDAVEFNASDTRSKRLLKDEVSTLLSNKSL--SGYFTGQGQAVSRKHVLIMDE 578
            ..|:|      |...:|.||||.|...:::..:.:..|.:::  .|:           .::|:||
Human    73 CAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGF-----------KLVILDE 126

  Fly   579 VDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRF-------QRPRLEQ 636
            .|.|..:......:.:....:::...:||....:..|.::|   .|...||       ..||||.
Human   127 ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQS---RCTRFRFGPLTPELMVPRLEH 188

  Fly   637 IKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAKEDASQK---------SGQQV 692
                   :..:|||.||...::.::..::.|:|:::|   :|.:...|..|         :|..:
Human   189 -------VVEEEKVDISEDGMKALVTLSSGDMRRALN---ILQSTNMAFGKVTEETVYTCTGHPL 243

  Fly   693 ATKDLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHD-YSLAPLFVQQNYLQVLPQGNKKDVLAK 756
            .:....:..| ::.:.||..............|..|| .:...|||.:   ...|...:..:|.|
Human   244 KSDIANILDW-MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHR---VDFPSSVRIHLLTK 304

  Fly   757 VAATADALSLGDLVEKRIRANS 778
            :|.....||:|  ..::|:.:|
Human   305 MADIEYRLSVG--TNEKIQLSS 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gnf1NP_001014605.1 PTZ00121 <12..434 CDD:173412 8/41 (20%)
BRCT_RFC1 232..310 CDD:349383
PRK04195 421..969 CDD:235250 75/383 (20%)
RFC1 764..917 CDD:462507 5/15 (33%)
RFC5NP_031396.1 rfc 16..329 CDD:234763 76/402 (19%)
Blue background indicates that the domain is not in the aligned region.

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