DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gnf1 and Rfc1

DIOPT Version :9

Sequence 1:NP_001014605.1 Gene:Gnf1 / 40607 FlyBaseID:FBgn0004913 Length:1008 Species:Drosophila melanogaster
Sequence 2:NP_001334286.1 Gene:Rfc1 / 19687 MGIID:97891 Length:1132 Species:Mus musculus


Alignment Length:1161 Identity:427/1161 - (36%)
Similarity:601/1161 - (51%) Gaps:243/1161 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AKAKSAEAENGETPSKAPKRRKAVIISSDEDEVVSPPETKKRKASKTA--------SSEDDV--V 68
            ||..::..|:...|.:..|:::.:..|..|.|.....:..|:|:.|.:        |.:|.|  |
Mouse    42 AKVNNSGKEDASKPKQHSKKKRIINDSDSESEETVQVKNAKKKSEKLSLSYKPGKVSQKDPVTYV 106

  Fly    69 AATPEP---IAKKA-----RNG----------------------QKPALSKLKRHVDPT---ELF 100
            :.|.|.   :.|||     .||                      .|| ||.:|  :.||   :.|
Mouse   107 SETDEDDDFVCKKAASKSKENGVSTNSYLGTSNVKKNEENVKTKNKP-LSPIK--LTPTSVLDYF 168

  Fly   101 GGET-----KRVIVPKPKTK-----------------------AVLE---FENEDIDRSL----- 129
            |.|:     |:::..|.|..                       |.||   .|:|:..|:|     
Mouse   169 GTESVQRSGKKMVTSKRKESSQNTEDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLALLDE 233

  Fly   130 --------------------MEVDLDESIKEAAPEK-KVHSITRSSPSPK-----RAKNSSPEPP 168
                                ::.||.::.|:.:|.| ::.|..|.:.||.     ||...:.:|.
Mouse   234 EPKIKKARKDSEEGEESFSSVQDDLSKAEKQKSPNKAELFSTARKTYSPAKHGKGRASEDAKQPC 298

  Fly   169 K----------PKST------------------------KSKATTPRVKKEKPAADLESSVLTDE 199
            |          ||::                        |..||.|:.:|..|.....|....:.
Mouse   299 KSAHRKEACSSPKASAKLALMKAKEESSYNETELLAARRKESATEPKGEKTTPKKTKVSPTKRES 363

  Fly   200 ---ERHERKRASAVLYQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIK 261
               |..|:||.:...|:.|.||......||||||||:.:||.|||||:||||||:||:||:|:|:
Mouse   364 VSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIE 428

  Fly   262 EYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSG--------IAKQ 318
            .|||||...|.||..|||:|.::|..|...|..|...||.||||.||||...|        ...:
Mouse   429 RYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAAEAE 493

  Fly   319 VKEEKKSPKKEHSSEEKGKKEVKTSRRSSDKKEKEATKLKYGEKHDIAKHKVKEEHTSPKETKDK 383
            :|:||...::.....::||:::..:::.|:.|:.:.|.||                .||.:.   
Mouse   494 MKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLK----------------NSPMKA--- 539

  Fly   384 LNDVPAVTLKVKKEPSSQKEHPPSPRTADLKTLDVVG---------MAWVDKHKPTSIKEIVGQA 439
                      ||||.|:      .||..|:|  :..|         :.||||:||.|:|.|:||.
Mouse   540 ----------VKKEAST------CPRGLDVK--ETHGNRSSNKEECLLWVDKYKPASLKNIIGQQ 586

  Fly   440 GAASNVTNHNLKLKAKQERVKVLHYFNFPRLMNWLSKWYVNHDGNKK-PQRPNPWAKNDDGSFYK 503
            |..|...                      :|:.||..|:.:....|| ..:....|..||||.:|
Mouse   587 GDQSCAN----------------------KLLRWLRNWHKSSPEEKKHAAKFGKLASKDDGSSFK 629

  Fly   504 AALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLKDEVSTLLSNKSLSGYFT-GQGQA 567
            |||||||||:||||||:||.:|||:..||.||||||||..||..|:..|:|.|:.|::| |...:
Mouse   630 AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPS 694

  Fly   568 VSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRP 632
            ||.:|.|||||||||||||||||:||||.|||.:.|||||||||||||||||||:||:|||||||
Mouse   695 VSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRP 759

  Fly   633 RLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAKEDA----SQKSGQQVA 693
            |:||||..::||.|||.:||.|..:.|||...|.|:||.::::::..|:..|    ..|:..|.|
Mouse   760 RVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRA 824

  Fly   694 TKDLKLGPWEVVRKVFTA-DEHKHMSFADKSDLFFHDYSLAPLFVQQNYLQVLP---QGNKKDVL 754
            .||::|||::|.||||.| :|..|||..|||||||||||:||||||:|||.|.|   .|:.|..|
Mouse   825 KKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHL 889

  Fly   755 AKVAATADALSLGDLVEKRIRANSAWSLLPTQAFFSSVLPGEHMCGHFTGQINFPGWLGKNSKSG 819
            ..::..||::..||||:.:||:...||||||||.::||||||.|.|:.|...:||.||||:|.:|
Mouse   890 MLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTG 954

  Fly   820 KRARLAQELHDHTRVCTSGSRLSVRLDYAPFLLDNIVRPLAKDGQEGVPAALDVMKDYHLLREDL 884
            |..|:.|:|..|..:.|..|:.:|.:||...:.|.:||||...|.||....:.:|..|:|::||.
Mouse   955 KHDRIVQDLSLHMSLRTYSSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDF 1019

  Fly   885 DSLVELTSWPGKKSPLDAVDGRVKAALTRSYNKEVMAYSYSAQAGIKKKKSEAAGADDDYLDEGP 949
            ::::|::||.||.|....:|.:||||.||:||||.....||.|.....:.|.....|.:|.:|  
Mouse  1020 ENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTGPALDSEYSEE-- 1082

  Fly   950 GEEDGAGGHLSSEEDEDKDNLELDSLIKAKKRTTTSKASGGSKKATSSTASKSKAK 1005
            .:||      .::.::::|.:|.|::||.||    :::|..||......:.|.|.|
Mouse  1083 FQED------DTQSEKEQDAVETDAMIKQKK----TRSSKPSKSEREKESKKGKGK 1128

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gnf1NP_001014605.1 COG5275 <151..358 CDD:227600 86/256 (34%)
BRCT 232..309 CDD:278934 43/76 (57%)
PRK04195 421..969 CDD:235250 266/557 (48%)
AAA 506..633 CDD:278434 91/127 (72%)
RFC1 764..917 CDD:285691 68/152 (45%)
Rfc1NP_001334286.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 14..87 10/44 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 92..111 5/18 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 120..201 16/83 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 225..378 28/152 (18%)
Interferon-stimulated-response-element binding region 354..528 70/173 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 491..525 6/33 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848146
Domainoid 1 1.000 156 1.000 Domainoid score I4192
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2187
Inparanoid 1 1.050 648 1.000 Inparanoid score I790
Isobase 1 0.950 - 0 Normalized mean entropy S1907
OMA 1 1.010 - - QHG52880
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003699
OrthoInspector 1 1.000 - - oto95198
orthoMCL 1 0.900 - - OOG6_101059
Panther 1 1.100 - - LDO PTHR23389
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1087
SonicParanoid 1 1.000 - - X3601
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.880

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