DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment opa and zic2b

DIOPT Version :9

Sequence 1:NP_001368991.1 Gene:opa / 40605 FlyBaseID:FBgn0003002 Length:688 Species:Drosophila melanogaster
Sequence 2:NP_001001820.1 Gene:zic2b / 570746 ZFINID:ZDB-GENE-030219-92 Length:427 Species:Danio rerio


Alignment Length:398 Identity:192/398 - (48%)
Similarity:230/398 - (57%) Gaps:87/398 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 AAATAAAYQNSGYGHFNSYASRDFLLGRREAEYGVAGSAGQASAAADSMLF---SGFPAQAAELG 125
            |||.||::.:|   .|||  :|:|||..|       |......|:....:|   ||....:...|
Zfish    74 AAAHAASFASS---TFNS--TREFLLRSR-------GFGDSTPASGQHPIFSSTSGSLHHSHPEG 126

  Fly   126 SGF----GQHPFHSHHH----------------------HHQMRMGMADAYAAGHPYNHHG-NFP 163
            .|.    |.|..|..||                      :||:....||      ||:.:| |..
Zfish   127 QGHLLFPGIHEQHGSHHGSPNILNGRLGLPGEVFGRTEQYHQVPNTRAD------PYSQYGLNMS 185

  Fly   164 TAAVHHPVVHHPSHHAMSAMHPAGAGAFLRYMRHQPASSASSVKQEMQCLWIDPDQPGLVPPGGR 228
            ....|||                  |||.||||.|      .:|||:.|.||||:|.|    ..:
Zfish   186 MNMAHHP------------------GAFFRYMRQQ------CIKQELICKWIDPEQLG----DPK 222

  Fly   229 KTCNKVFHSMHEIVTHLTVEHVGGPECTTHACFWVGCSRNGRPFKAKYKLVNHIRVHTGEKPFAC 293
            |.|:|.|.:|||:|||::.|||||||...|.|||..|.|..:|||||||||||||||||||||||
Zfish   223 KCCSKTFSTMHELVTHVSTEHVGGPEQCNHICFWEECPRESKPFKAKYKLVNHIRVHTGEKPFAC 287

  Fly   294 PHPGCGKVFARSENLKIHKRTHTGEKPFKCEHEGCDRRFANSSDRKKHSHVHTSDKPYNCRINGC 358
            |.||||||||||||||||||||||||||.||.||||||||||||||||.|||||||||.|::  |
Zfish   288 PFPGCGKVFARSENLKIHKRTHTGEKPFLCEFEGCDRRFANSSDRKKHMHVHTSDKPYLCKL--C 350

  Fly   359 DKSYTHPSSLRKHMKVHGN---VDEKSP--SHGYDSEGEESSSSSIITGGAQTPPSTRLDGSAGS 418
            |||||||||||||||||.:   :.:.||  |.||:|    |:.||:|:..::|..:...|.:|.:
Zfish   351 DKSYTHPSSLRKHMKVHEDQAPIADSSPAGSSGYES----STPSSLISPCSETHSTLSPDSAALN 411

  Fly   419 SSGVSSLS 426
            |||.:||:
Zfish   412 SSGHNSLT 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
opaNP_001368991.1 zf_ZIC 206..253 CDD:408166 24/46 (52%)
C2H2 Zn finger 265..285 CDD:275368 15/19 (79%)
SFP1 <287..373 CDD:227516 76/85 (89%)
C2H2 Zn finger 293..315 CDD:275368 20/21 (95%)
C2H2 Zn finger 323..345 CDD:275368 19/21 (90%)
C2H2 Zn finger 353..375 CDD:275368 17/21 (81%)
zic2bNP_001001820.1 C2H2 Zn finger 259..279 CDD:275368 15/19 (79%)
zf-H2C2_2 272..298 CDD:290200 24/25 (96%)
C2H2 Zn finger 290..309 CDD:275368 18/18 (100%)
zf-H2C2_2 301..328 CDD:290200 24/26 (92%)
C2H2 Zn finger 317..339 CDD:275368 19/21 (90%)
zf-C2H2 345..367 CDD:278523 18/23 (78%)
C2H2 Zn finger 347..367 CDD:275368 17/21 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9679
eggNOG 1 0.900 - - E33208_3BCH8
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 338 1.000 Inparanoid score I2344
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000467
OrthoInspector 1 1.000 - - otm24928
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19818
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X217
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
88.050

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