DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment opa and zic3

DIOPT Version :9

Sequence 1:NP_001368991.1 Gene:opa / 40605 FlyBaseID:FBgn0003002 Length:688 Species:Drosophila melanogaster
Sequence 2:NP_001005691.1 Gene:zic3 / 448197 XenbaseID:XB-GENE-480431 Length:441 Species:Xenopus tropicalis


Alignment Length:484 Identity:204/484 - (42%)
Similarity:249/484 - (51%) Gaps:133/484 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 AQHHLAS---YGLRMSPNTTASNSNAQQQQQQQLEMTQQQQQQQQQQQQQQQQDQESAAAT--AA 69
            |:||..|   .|:.::|.|..|::.|.:......:::..|                |:|.|  |:
 Frog    22 ARHHEMSNRDAGMGLNPFTEPSHAAAFKLSPASHDLSSSQ----------------SSAFTPQAS 70

  Fly    70 AYQNSGYGH------------FNSYASRDFLLGRREAEYGVAGSAGQASAAADSMLFS--GFPAQ 120
            .|.|| .||            |||  :||||...|.     :|.|...||.....||:  |.|  
 Frog    71 GYANS-LGHHAGQVPSYGGAAFNS--TRDFLFRNRN-----SGIADSTSAGGQHGLFASHGPP-- 125

  Fly   121 AAELGSGFGQHPFH-----------------SHHHHHQMRMGM------------------ADAY 150
                  |.|:.|.|                 .|..:.||.:|:                  .|.|
 Frog   126 ------GIGEPPGHLIFPGLHEQSSSHTSSNGHVVNGQMHLGLRGDIFGRPDPYRAVPSPRTDHY 184

  Fly   151 AAG--HPYNHHGNFPTAAVHHPVVHHPSHHAMSAMHPAGAGAFLRYMRHQPASSASSVKQEMQCL 213
            ||.  |.|||.......|.||                 |.|||.|||| ||      :|||:.|.
 Frog   185 AAAQFHNYNHMNMSMNVAAHH-----------------GPGAFFRYMR-QP------IKQELSCK 225

  Fly   214 WIDPDQPGLVPPGGRKTCNKVFHSMHEIVTHLTVEHVGGPECTTHACFWVGCSRNGRPFKAKYKL 278
            |:: :.|...|   :|||::.|.||||:|||:|:|||||||.|.|.|:|..|.|.|:.|||||||
 Frog   226 WLE-ESPMNRP---QKTCDRTFSSMHELVTHMTMEHVGGPEQTNHICYWEECPRGGKSFKAKYKL 286

  Fly   279 VNHIRVHTGEKPFACPHPGCGKVFARSENLKIHKRTHTGEKPFKCEHEGCDRRFANSSDRKKHSH 343
            |||||||||||||.||.|||||:|||||||||||||||||||||||.||||||||||||||||.|
 Frog   287 VNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH 351

  Fly   344 VHTSDKPYNCRINGCDKSYTHPSSLRKHMKVHGNVDEKSPSHGYDSEGEESSSSSIITGGAQTPP 408
            ||||||||.|::  ||||||||||||||||||            :|:|.:||.::.....:.|||
 Frog   352 VHTSDKPYICKV--CDKSYTHPSSLRKHMKVH------------ESQGSDSSPAASSGYESATPP 402

  Fly   409 STRLDGSAGSSSGVSSLSGGSGIKSSPHS 437
            :.   .||.|.....:.|......:|.|:
 Frog   403 AM---VSANSEEPSKNSSATHQTNNSSHN 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
opaNP_001368991.1 zf_ZIC 206..253 CDD:408166 23/46 (50%)
C2H2 Zn finger 265..285 CDD:275368 15/19 (79%)
SFP1 <287..373 CDD:227516 75/85 (88%)
C2H2 Zn finger 293..315 CDD:275368 19/21 (90%)
C2H2 Zn finger 323..345 CDD:275368 19/21 (90%)
C2H2 Zn finger 353..375 CDD:275368 17/21 (81%)
zic3NP_001005691.1 zf_ZIC 216..261 CDD:375792 25/54 (46%)
C2H2 Zn finger 273..293 CDD:275368 15/19 (79%)
SFP1 <295..379 CDD:227516 75/85 (88%)
C2H2 Zn finger 301..323 CDD:275368 19/21 (90%)
C2H2 Zn finger 331..353 CDD:275368 19/21 (90%)
C2H2 Zn finger 361..381 CDD:275368 17/21 (81%)
CiPC <365..>433 CDD:374124 30/79 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 375..441 20/69 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 72 1.000 Domainoid score I9147
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 339 1.000 Inparanoid score I2316
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000467
OrthoInspector 1 1.000 - - otm48407
Panther 1 1.100 - - O PTHR19818
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X217
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.150

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