Protein Alignment opa and lmd

DIOPT Version :10

• Sequence 1: NP_001368991.1
• Gene: opa / 40605
• FlyBaseID: FBgn0003002
• Length: 688
• Species: Drosophila melanogaster
• Sequence 2: NP_732811.1
• Gene: lmd / 42717
• FlyBaseID: FBgn0039039
• Length: 866
• Species: Drosophila melanogaster
• Alignment Length: 826
• Identity: 199/826 - (24%)
• Similarity: 283/826 - (34%)
• Gaps: 284/826 - (34%)

  Fly    50 QQQQQQQQQQDQESAAA--TAAAYQNSGYGHFN-----SYASRDF--LLGRRE------------ 93
            |.|||...|.|...|||  |...||...|...|     .:...|.  |.|..|
  Fly   103 QDQQQDSDQDDIVCAAAENTGMPYQQGQYTQLNREDIFRFEPEDIARLTGESELPGMLQHPQTPY 167

  Fly    94 ----------------AEYGVAG--------------------------------------SAGQ 104
                            ::|.|..                                      :.|:
  Fly   168 TPYTPYTPYTPCSAQNSQYAVQPANDSINLDIDYFNYDEINCQSKNQSPCSSPHLDAWLNFNLGE 232

  Fly   105 ASAAADSMLFS--------------GFPAQAAELGSGFGQH---PFHSHHHHHQMRMGMADAYAA 152
            .||||.|...|              ..||:...:.|.||..   |..:.::.     ..|:.|..
  Fly   233 ISAAASSSAASPKLGNVFEEQVKEEASPAKLPSMNSTFGTPKCIPMCASNYE-----DYANLYQQ 292

  Fly   153 GHPY---NHHGNFPTAAVHHPVVHHPSHHAMSAMHPAGAGAFLRYMR---------------HQP 199
            |..|   |:|.|. ...|..|...|.:...:..:.....|...::::               |||
  Fly   293 GSGYSTENYHNNM-AQVVEKPNREHKAIWTIDELDELMLGEQQQFLQHHLQQQHLQEQQEQLHQP 356

  Fly   200 ASSASSVK-----------------QEMQCLWIDPDQ----------------PGLVPPGGRKTC 231
            .......:                 :|.:.|..|.|:                |....|....||
  Fly   357 HGQEQQTQNCKDDLVNYLSDEFIKAEEFRSLDSDDDENYNEEEDDLDNDVFAPPAESDPKPDSTC 421

  Fly   232 --------NKV-------------FHSMHEIVTHLTVEHVGGPECTTHACFWVGCSRNGRPFKAK 275
                    |:|             |......|.|:...||...:....:|||:.|.|..:||.|:
  Fly   422 CDPEAEPENEVIPLICRWTGCDEEFPHQQAFVEHIEKCHVDVRKGEDFSCFWLDCPRRYKPFNAR 486

  Fly   276 YKLVNHIRVHTGEKPFACPHPGCGKVFARSENLKIHKRTHTGEKPFKCEHEGCDRRFANSSDRKK 340
            |||:.|:|||:||||..||.|||.|.|:|.||||||:|:||||:|:.|:::||.:.|:|||||.|
  Fly   487 YKLLIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIHQRSHTGERPYGCQYKGCLKAFSNSSDRAK 551

  Fly   341 HSHVHTSDKPYNCRINGCDKSYTHPSSLRKHMKVH------GNVDEKSPSHGYDSEGEESSSSSI 399
            |...|...|||.|::.||.|.||.|||||||:|.|      |.:..||
  Fly   552 HQRTHYDTKPYACQLPGCTKRYTDPSSLRKHVKNHALRNANGQLRRKS----------------- 599

  Fly   400 ITGGAQTPPS--------TRLDGSAGSSSGVSSLSGGSGIKSSPHSIKSEPNPMHSVHLGASSSG 456
             .|||..|||        .|...||....||.:   |.|:     ::.|.|.....
  Fly   600 -AGGASVPPSGPKKAAKTRRHSESALVQRGVGA---GVGV-----AVPSAPGDQRQ--------- 646

  Fly   457 SSSTASSSASHLLQHQQHQHQQQQQQQQHQQQAQQQQQL----TAHPSDPKS------SPALQLM 511
            ..|.:.|.|..|.||||.|.||||||:|||.:.::....    |...::..|      |..:.::
  Fly   647 HRSNSCSEALLLQQHQQQQQQQQQQQKQHQPENERTTDRSNCGTGVAANNNSMNFNELSNCIVII 711

  Fly   512 AASASAYLPPPLGPPPSHHHHPHHHQAAPSPGAAAASASMLHHNHHLLYHPAAQHHPPSDWYHTT 576
            ..:.|.   .|.||            |..:...|..:|:..:.|.::.  ||    |.::.....
  Fly   712 EHNQSG---GPAGP------------ATLATATATTTATATYGNGNMA--PA----PETEVLSVC 755

  Fly   577 APSGSAEAMNPLNHFGHHHHHHHLMHPGAATAYXEWENWWPEEAPPPAAQPMATPTTIAGGTGPA 641
            :..||:.:.:..|.:..:.:....:.....|                 |:|..||...|.|...|
  Fly   756 SGGGSSNSNSNNNRYNANINQLSELEQLLTT-----------------AKPTGTPAASANGISLA 803

  Fly   642 QGSVEESASSLDWICCQRLQNLALVAQCENQIFLKVEESTLNFLPD 687
            ..:...:..|                :|....|:..|..| .:|.|
  Fly   804 NNNGRANGDS----------------KCHLSEFVSFEYVT-KYLTD 832

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
opa	NP_001368991.1	zf_ZIC	206..253	CDD:436441	15/100 (15%)
		C2H2 Zn finger	265..285	CDD:275368	10/19 (53%)
		SFP1	<287..373	CDD:227516	52/85 (61%)
		C2H2 Zn finger	293..315	CDD:275368	15/21 (71%)
		C2H2 Zn finger	323..345	CDD:275368	11/21 (52%)
		C2H2 Zn finger	353..375	CDD:275368	14/21 (67%)
lmd	NP_732811.1	SFP1	<493..585	CDD:227516	55/91 (60%)
		C2H2 Zn finger	504..526	CDD:275368	15/21 (71%)
		C2H2 Zn finger	534..556	CDD:275368	11/21 (52%)
		C2H2 Zn finger	564..586	CDD:275368	14/21 (67%)