DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment opa and lmd

DIOPT Version :9

Sequence 1:NP_001368991.1 Gene:opa / 40605 FlyBaseID:FBgn0003002 Length:688 Species:Drosophila melanogaster
Sequence 2:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster


Alignment Length:826 Identity:199/826 - (24%)
Similarity:283/826 - (34%) Gaps:284/826 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 QQQQQQQQQQDQESAAA--TAAAYQNSGYGHFN-----SYASRDF--LLGRRE------------ 93
            |.|||...|.|...|||  |...||...|...|     .:...|.  |.|..|            
  Fly   103 QDQQQDSDQDDIVCAAAENTGMPYQQGQYTQLNREDIFRFEPEDIARLTGESELPGMLQHPQTPY 167

  Fly    94 ----------------AEYGVAG--------------------------------------SAGQ 104
                            ::|.|..                                      :.|:
  Fly   168 TPYTPYTPYTPCSAQNSQYAVQPANDSINLDIDYFNYDEINCQSKNQSPCSSPHLDAWLNFNLGE 232

  Fly   105 ASAAADSMLFS--------------GFPAQAAELGSGFGQH---PFHSHHHHHQMRMGMADAYAA 152
            .||||.|...|              ..||:...:.|.||..   |..:.::.     ..|:.|..
  Fly   233 ISAAASSSAASPKLGNVFEEQVKEEASPAKLPSMNSTFGTPKCIPMCASNYE-----DYANLYQQ 292

  Fly   153 GHPY---NHHGNFPTAAVHHPVVHHPSHHAMSAMHPAGAGAFLRYMR---------------HQP 199
            |..|   |:|.|. ...|..|...|.:...:..:.....|...::::               |||
  Fly   293 GSGYSTENYHNNM-AQVVEKPNREHKAIWTIDELDELMLGEQQQFLQHHLQQQHLQEQQEQLHQP 356

  Fly   200 ASSASSVK-----------------QEMQCLWIDPDQ----------------PGLVPPGGRKTC 231
            .......:                 :|.:.|..|.|:                |....|....||
  Fly   357 HGQEQQTQNCKDDLVNYLSDEFIKAEEFRSLDSDDDENYNEEEDDLDNDVFAPPAESDPKPDSTC 421

  Fly   232 --------NKV-------------FHSMHEIVTHLTVEHVGGPECTTHACFWVGCSRNGRPFKAK 275
                    |:|             |......|.|:...||...:....:|||:.|.|..:||.|:
  Fly   422 CDPEAEPENEVIPLICRWTGCDEEFPHQQAFVEHIEKCHVDVRKGEDFSCFWLDCPRRYKPFNAR 486

  Fly   276 YKLVNHIRVHTGEKPFACPHPGCGKVFARSENLKIHKRTHTGEKPFKCEHEGCDRRFANSSDRKK 340
            |||:.|:|||:||||..||.|||.|.|:|.||||||:|:||||:|:.|:::||.:.|:|||||.|
  Fly   487 YKLLIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIHQRSHTGERPYGCQYKGCLKAFSNSSDRAK 551

  Fly   341 HSHVHTSDKPYNCRINGCDKSYTHPSSLRKHMKVH------GNVDEKSPSHGYDSEGEESSSSSI 399
            |...|...|||.|::.||.|.||.|||||||:|.|      |.:..||                 
  Fly   552 HQRTHYDTKPYACQLPGCTKRYTDPSSLRKHVKNHALRNANGQLRRKS----------------- 599

  Fly   400 ITGGAQTPPS--------TRLDGSAGSSSGVSSLSGGSGIKSSPHSIKSEPNPMHSVHLGASSSG 456
             .|||..|||        .|...||....||.:   |.|:     ::.|.|.....         
  Fly   600 -AGGASVPPSGPKKAAKTRRHSESALVQRGVGA---GVGV-----AVPSAPGDQRQ--------- 646

  Fly   457 SSSTASSSASHLLQHQQHQHQQQQQQQQHQQQAQQQQQL----TAHPSDPKS------SPALQLM 511
            ..|.:.|.|..|.||||.|.||||||:|||.:.::....    |...::..|      |..:.::
  Fly   647 HRSNSCSEALLLQQHQQQQQQQQQQQKQHQPENERTTDRSNCGTGVAANNNSMNFNELSNCIVII 711

  Fly   512 AASASAYLPPPLGPPPSHHHHPHHHQAAPSPGAAAASASMLHHNHHLLYHPAAQHHPPSDWYHTT 576
            ..:.|.   .|.||            |..:...|..:|:..:.|.::.  ||    |.::.....
  Fly   712 EHNQSG---GPAGP------------ATLATATATTTATATYGNGNMA--PA----PETEVLSVC 755

  Fly   577 APSGSAEAMNPLNHFGHHHHHHHLMHPGAATAYXEWENWWPEEAPPPAAQPMATPTTIAGGTGPA 641
            :..||:.:.:..|.:..:.:....:.....|                 |:|..||...|.|...|
  Fly   756 SGGGSSNSNSNNNRYNANINQLSELEQLLTT-----------------AKPTGTPAASANGISLA 803

  Fly   642 QGSVEESASSLDWICCQRLQNLALVAQCENQIFLKVEESTLNFLPD 687
            ..:...:..|                :|....|:..|..| .:|.|
  Fly   804 NNNGRANGDS----------------KCHLSEFVSFEYVT-KYLTD 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
opaNP_001368991.1 zf_ZIC 206..253 CDD:408166 15/100 (15%)
C2H2 Zn finger 265..285 CDD:275368 10/19 (53%)
SFP1 <287..373 CDD:227516 52/85 (61%)
C2H2 Zn finger 293..315 CDD:275368 15/21 (71%)
C2H2 Zn finger 323..345 CDD:275368 11/21 (52%)
C2H2 Zn finger 353..375 CDD:275368 14/21 (67%)
lmdNP_732811.1 zf-H2C2_2 489..515 CDD:290200 16/25 (64%)
C2H2 Zn finger 504..526 CDD:275368 15/21 (71%)
C2H2 Zn finger 534..556 CDD:275368 11/21 (52%)
C2H2 Zn finger 564..586 CDD:275368 14/21 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466591
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D268347at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19818
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.040

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