DRSC/TRiP Functional Genomics Resources

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Protein Alignment opa and Zic2

DIOPT Version :9

Sequence 1:NP_001368991.1 Gene:opa / 40605 FlyBaseID:FBgn0003002 Length:688 Species:Drosophila melanogaster
Sequence 2:NP_001101862.2 Gene:Zic2 / 361096 RGDID:1311174 Length:529 Species:Rattus norvegicus


Alignment Length:515 Identity:212/515 - (41%)
Similarity:274/515 - (53%) Gaps:124/515 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NAFIEPAQHHLASYGL-----RMSPNTTASNSNAQQQQQQQLEMTQQQQQQQQQQQQQQQQDQES 63
            |.|::.|..|:.::.|     .:||..:::.::                      |........:
  Rat    47 NGFVDSAAAHMGAFKLNPGAHELSPGQSSAFTS----------------------QGPGAYPGSA 89

  Fly    64 AAATAAAYQNSGYGHFNSY------ASRDFLLGRR--------EAEYGV--AGSAGQASAAADS- 111
            |||.|||.......|..||      ::||||...|        ..::|:  .|:.|...|.:|: 
  Rat    90 AAAAAAAALGPHAAHVGSYSGPPFNSTRDFLFRSRGFGDSAPGGGQHGLFGPGAGGLHHAHSDAQ 154

  Fly   112 --MLFSGFPAQAAELGSGFGQHPFHSHHH--HHQMRMGM------------------ADAYAAGH 154
              :||.|.|.          ||..|:..:  :.|||:|:                  .|.|:|..
  Rat   155 GHLLFPGLPE----------QHGPHASQNVLNGQMRLGLPGEVFGRSEQYRQVASPRTDPYSAAQ 209

  Fly   155 PYNHHG--------NFPTAAVHHPVVHHPSHHAMSAMHPAGAGAFLRYMRHQPASSASSVKQEMQ 211
            .:|.:|        |...||.||   ||..||         .|||.||||.|      .:|||:.
  Rat   210 LHNQYGPMNMNMGMNMAAAAAHH---HHHHHH---------PGAFFRYMRQQ------CIKQELI 256

  Fly   212 CLWIDPDQPGLVPPGGRKTCNKVFHSMHEIVTHLTVEHVGGPECTTHACFWVGCSRNGRPFKAKY 276
            |.||||:|  |..|  :|:|||.|.:|||:|||::||||||||.:.|.|||..|.|.|:||||||
  Rat   257 CKWIDPEQ--LSNP--KKSCNKTFSTMHELVTHVSVEHVGGPEQSNHVCFWEECPREGKPFKAKY 317

  Fly   277 KLVNHIRVHTGEKPFACPHPGCGKVFARSENLKIHKRTHTGEKPFKCEHEGCDRRFANSSDRKKH 341
            |||||||||||||||.||.||||||||||||||||||||||||||:||.||||||||||||||||
  Rat   318 KLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFQCEFEGCDRRFANSSDRKKH 382

  Fly   342 SHVHTSDKPYNCRINGCDKSYTHPSSLRKHMKVHGNVDEKSPSHGYDSEGEESSS-SSIITGGAQ 405
            .|||||||||.|::  ||||||||||||||||||.:..:.|.|....|.|.|||: ..:::..|:
  Rat   383 MHVHTSDKPYLCKM--CDKSYTHPSSLRKHMKVHESSPQGSESSPAASSGYESSTPPGLVSPSAE 445

  Fly   406 TPPSTRLDGSAGSSSGVSSLSGGSGIKSSPHSIKSEPNPMHSVHLGASSSGSSSTASSSA 465
            ...|:.|..:|.:::..::.:..:               :.:||.||.|..|.|...|:|
  Rat   446 PQSSSNLSPAAAAAAAAAAAAAAA---------------VSAVHRGAGSGSSGSGGGSAA 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
opaNP_001368991.1 zf_ZIC 206..253 CDD:408166 27/46 (59%)
C2H2 Zn finger 265..285 CDD:275368 16/19 (84%)
SFP1 <287..373 CDD:227516 75/85 (88%)
C2H2 Zn finger 293..315 CDD:275368 20/21 (95%)
C2H2 Zn finger 323..345 CDD:275368 19/21 (90%)
C2H2 Zn finger 353..375 CDD:275368 17/21 (81%)
Zic2NP_001101862.2 zf_ZIC 249..294 CDD:408166 28/54 (52%)
C2H2 Zn finger 306..326 CDD:275368 16/19 (84%)
SFP1 <328..412 CDD:227516 75/85 (88%)
C2H2 Zn finger 334..356 CDD:275368 20/21 (95%)
C2H2 Zn finger 364..386 CDD:275368 19/21 (90%)
C2H2 Zn finger 394..414 CDD:275368 17/21 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9488
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 334 1.000 Inparanoid score I2326
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000467
OrthoInspector 1 1.000 - - otm45332
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19818
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X217
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.150

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