DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ctrip and smurf2

DIOPT Version :9

Sequence 1:NP_001189170.1 Gene:ctrip / 40596 FlyBaseID:FBgn0260794 Length:3140 Species:Drosophila melanogaster
Sequence 2:NP_001107898.1 Gene:smurf2 / 563633 ZFINID:ZDB-GENE-030131-1830 Length:765 Species:Danio rerio


Alignment Length:299 Identity:89/299 - (29%)
Similarity:139/299 - (46%) Gaps:47/299 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly  2841 FKFLGKFMAKAVMDSRMLDLPFSLPFYRWLVSEEHSIGLADLMRVAPEVQNTLVRLQDLVRQREY 2905
            |.|:|:.|..||.....:|..|:||||:.|:.:  .|.|.|:..|.|::.|:||          :
Zfish   500 FHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGK--PITLDDMESVDPDLHNSLV----------W 552

  Fly  2906 ILSDPNIDAMEKTEKIEQLDLDGCPIADLGLDFVLPGHANI---ELCRGGRDTPVTVHNLHQYIS 2967
            ||.:.....::.|..:|.                 ..:..|   ||...|:..|||.....:|:.
Zfish   553 ILDNDITGVLDHTFCVEH-----------------NAYGEIIQHELKPNGKSIPVTQDTKKEYVR 600

  Fly  2968 LVTYWFLIEGVQKQFEALREGFDSVFPIQRLRMFYPEELECVFCGSGSEQQHSRWEIKMLQESCR 3032
            |...|..:.|::.||.||::||:.|.|...|:.|..:|||.:.||.|      :.:|...:.:.|
Zfish   601 LYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKAFDEKELELIVCGLG------KIDINDWKSNTR 659

  Fly  3033 TDHGFHQDSQAIQYLYEILASYNRDEQRAFLQFVTGSPRLPTGGFKALT----PPLTIVRKTLDE 3093
            ..| ...||..:::.:..:.||:.:.:...|||||||.|:|..|||||.    |.|..:.: :|.
Zfish   660 LKH-CTPDSNIVKWFWRAVESYDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQ-IDA 722

  Fly  3094 NQNPNDYLPSVMTCVNYLKLPDYSSREVMRQKLKVAANE 3132
            :.|   .||...||.|.:.:|.|.|.:.:..||..|..|
Zfish   723 STN---NLPKAHTCFNRIDIPPYESYDKLYDKLLTAIEE 758

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ctripNP_001189170.1 Extensin_2 <688..731 CDD:252669
WWE 1409..1481 CDD:128922
FAM199X <1985..2074 CDD:292442
HECTc <2818..3138 CDD:294058 89/299 (30%)
smurf2NP_001107898.1 C2_Smurf-like 13..137 CDD:176028
WW 159..188 CDD:278809
WW 252..283 CDD:197736
WW 298..330 CDD:197736
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 341..375
HECTc 410..762 CDD:238033 89/299 (30%)
HECTc 437..762 CDD:214523 89/299 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.