DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ctrip and Nedd4

DIOPT Version :9

Sequence 1:NP_001189170.1 Gene:ctrip / 40596 FlyBaseID:FBgn0260794 Length:3140 Species:Drosophila melanogaster
Sequence 2:NP_648993.1 Gene:Nedd4 / 39958 FlyBaseID:FBgn0259174 Length:1007 Species:Drosophila melanogaster


Alignment Length:1454 Identity:266/1454 - (18%)
Similarity:429/1454 - (29%) Gaps:599/1454 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly  1832 LASTSSG---AASSSSSSSSSSSASALQHKMTDMLKRKAPPKRKSQS-GGRAKSRQEDAAVAPAG 1892
            :::.|||   ||:....|||||.|..      |:  .:.||:|::.| .|:.::|||        
  Fly     1 MSARSSGLVAAAALPVPSSSSSVAGG------DV--PRPPPRRRAASVAGQQQTRQE-------- 49

  Fly  1893 SGPGGAPPSS------SGSAMHELLSRATSLGSGNGGRSTPNSGGGSGSSKSRFNAG-------- 1943
            .|.|..|..|      ||.:.|..:...|               |.|.:.|..|.|.        
  Fly    50 FGNGYTPRRSLAAVNDSGDSCHLRIVVLT---------------GQSLAKKDIFGASDPYVRIDL 99

  Fly  1944 NSSNAGSSKSSFLA-----SLNPARWGRQ------------------------------------ 1967
            |:.|...:..|.|.     :|||. |..:                                    
  Fly   100 NTINGDINIDSVLTKTKKKTLNPT-WNEEFIFRVKPSEHKLVFQVFDENRLTRDDFLGMVELTLV 163

  Fly  1968 ---THQNHHHHHQQSQ------------------QQHHGLSKDSGNSNSTGSGSGAGLAYTVSQH 2011
               |.|......:||.                  :.:|...:::...:...||:..|....|...
  Fly   164 NLPTEQEGRTIGEQSYTLRPRRSVGAKSRIKGTLRIYHAFIRETREQSEPSSGNSDGEWEHVEAT 228

  Fly  2012 GAGSGAG-------GLNAAAVAASISKSISHANLLAAANRERARQWVR--------------EQA 2055
            .||..:.       |.:.|..|....:..::.......:..|..||.|              :.|
  Fly   229 NAGETSAQPHPFPTGGHDALPAGWEERQDANGRTYYVNHTARTTQWDRPTVLNSHSSQSTDDQLA 293

  Fly  2056 VDFVKRY----TEQEAKRSKAASESGATQSGSSGVGLSSTGNTPLSTAGSTNVLERLSSILFKLN 2116
            .||.:|:    .:.|:.||..:....:.:..::..||:.|..|..:::...|.....:.||.::.
  Fly   294 SDFQRRFHISVDDTESGRSADSISHNSIEDNNNAAGLAYTPKTAATSSAPPNTPTNNNGILAQIA 358

  Fly  2117 GSYHDCLDALLELKTILLESDISPFEVNHSGLIKAMLNYMTSETGLVERDARLRSFMHVFAGLPL 2181
            ..|.             .|.|..| .|:|:..:     |.:....:..|...:       :...|
  Fly   359 MQYR-------------AEEDQDP-TVDHTSFV-----YNSLRHPVAHRQPEI-------SATSL 397

  Fly  2182 EPLLQNVGQMPTIEPIAF-GAFVAKLNGCVTQLEQFPVKVHDFPAGPGGRSNQSALRFFNTHQLK 2245
            :..|:.|.:.|.:..||. ..|..:..|.:.                ||...|...|   ..|::
  Fly   398 QNDLRPVREAPGVPDIAITNPFTRRAAGNMA----------------GGAGWQQERR---RQQMQ 443

  Fly  2246 CNLQRHPQCNNLRQWKGGTVKIDPLAMVQAIERYLVVRGYGGIRADSDDDSEEDMDDNVAAVVLS 2310
            .::|:|.|    ||.:            |...|.|:         |.|...:|.          .
  Fly   444 LHIQQHQQ----RQQQ------------QQQNRILL---------DVDHRQQEP----------Q 473

  Fly  2311 QASFRHKLQFTIG----DHVLPYNMTVYQAVKQFSPLVSEQPETDNESETLLGNASIWVQQHTIH 2371
            ....||:.|....    ||...:|           |.....|.|...||.  .||::        
  Fly   474 HRGQRHQQQHRPSNEDTDHTDSHN-----------PSDISAPSTRRNSEE--DNAAV-------- 517

  Fly  2372 YRPVEEEVTSGAAAGAASSSSSCSSGVQKQQSSSSSASSCVNATSSCSSSSGVASGGGSLTKKAH 2436
              |..|:.|.|                                                      
  Fly   518 --PPMEQNTGG------------------------------------------------------ 526

  Fly  2437 KSSSKFMRKKTEL---WHEGIAPVVISALKPFLSSSLPADVVTVQDASLDALCMLRVIHALNR-H 2497
                    ::..|   |...:||   :....|:.                        ||..| .
  Fly   527 --------EEEPLPPRWSMQVAP---NGRTFFID------------------------HASRRTT 556

  Fly  2498 WDHLYGCVVRQNIIPQSDFIHPKIMAKANRQLQDPLVIMTGNLP--------------------- 2541
            |           |.|::....|  |....|:::|.|    |.||                     
  Fly   557 W-----------IDPRNGRASP--MPNQTRRVEDDL----GPLPEGWEERVHTDGRVFYIDHNTR 604

  Fly  2542 --QW------LPQI-GMACPFLFPFETRHLLFYATSFDRDRALQRLLDTTPDLNAAESSERVAPR 2597
              ||      .|.| |.|.|:...::.::..|                    .:.......|..:
  Fly   605 TTQWEDPRLSNPNIAGQAVPYSRDYKQKYEYF--------------------KSHIRKPTNVPNK 649

  Fly  2598 LDRRKRAISRTEILKQAEHILQDFGHS---KALLEIQYENEVGTGLGP-TLEFYALVSAELQRTD 2658
            .:.|   |.||.||:.:..|:.....:   |..|.:::|.|.|...|. ..|::.|:|.|:....
  Fly   650 FEIR---IRRTSILEDSYRIISSVTKTDLLKTKLWVEFEGETGLDYGGLAREWFYLLSKEMFNPY 711

  Fly  2659 LGLWNGSDSYKQNSVTIVDVVKANSAVLHIEDALEATTTDQNTPAVAGASLVSSSTTTTTTTAQQ 2723
            .||:                                                             
  Fly   712 YGLF------------------------------------------------------------- 715

  Fly  2724 HQHPPTRSSSRSHVLRSGAGQQPVEHSSSSAGANENALNMVIAQQFSDTNSANPAAIDNPSSTTT 2788
                                    |:|                            |:||      
  Fly   716 ------------------------EYS----------------------------AMDN------ 722

  Fly  2789 ATTVVQHNTTTNNSSIITTTTTTSYVHAVHGLFPLPLGKSSKLPQMTKAKAKFKFLGKFMAKAVM 2853
                  :....||.|.:......||                           |||:|:....||.
  Fly   723 ------YTLQINNGSGLCNEEHLSY---------------------------FKFIGRIAGMAVY 754

  Fly  2854 DSRMLDLPFSLPFYRWLVSEEHSIGLADLMRVAPEVQNTLVRLQDLVRQREYILSDPNIDAMEKT 2918
            ..::||..|..|||:.::  :..|.|.|:..|..|..|:|:.:::         :||.|      
  Fly   755 HGKLLDAFFIRPFYKMML--QKPIDLKDMESVDTEYYNSLMWIKE---------NDPRI------ 802

  Fly  2919 EKIEQLDLDGCPIADLGLDFVLPGHANIELCRGGRDTPVTVHNLHQYISLVTYWFLIEGVQKQFE 2983
                 |:|..|...|     |....:..||..||.:..||..|..:||.||..|..:..|::|..
  Fly   803 -----LELTFCLDED-----VFGQKSQHELKPGGANIDVTNENKDEYIKLVIEWRFVARVKEQMS 857

  Fly  2984 ALREGFDSVFPIQRLRMFYPEELECVFCGSGSEQQHSRWEIKMLQESCRTDHGFHQDSQAIQYLY 3048
            :..:||.|:.|:..:::|...|||.:.||.      ...::|..:|:......:|.:...||:.:
  Fly   858 SFLDGFGSIIPLNLIKIFDEHELELLMCGI------QNIDVKDWRENTLYKGDYHMNHIIIQWFW 916

  Fly  3049 EILASYNRDEQRAFLQFVTGSPRLPTGGFKALTPPLTIVRKTLDENQNPNDYLPSVMTCVNYLKL 3113
            ..:.|::.:.:...||||||:.|:|..|||.|.........|:::...||:: |...||.|.|.|
  Fly   917 RAVLSFSNEMRSRLLQFVTGTSRVPMNGFKELYGSNGPQMFTIEKWGTPNNF-PRAHTCFNRLDL 980

  Fly  3114 PDYSSREVMRQKLKVAANEGSMSF 3137
            |.|.....::.|| :.|.|||..|
  Fly   981 PPYEGYLQLKDKL-IKAIEGSQGF 1003

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ctripNP_001189170.1 Extensin_2 <688..731 CDD:252669
WWE 1409..1481 CDD:128922
FAM199X <1985..2074 CDD:292442 20/113 (18%)
HECTc <2818..3138 CDD:294058 87/320 (27%)
Nedd4NP_648993.1 C2_NEDD4_NEDD4L 71..204 CDD:175999 20/148 (14%)
WW 248..277 CDD:278809 4/28 (14%)
WW 531..560 CDD:278809 10/66 (15%)
WW 581..613 CDD:197736 4/31 (13%)
HECTc 650..1003 CDD:238033 115/542 (21%)
HECTc 674..1003 CDD:214523 108/515 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.