DRSC/TRiP Functional Genomics Resources

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Protein Alignment atms and Paf1

DIOPT Version :9

Sequence 1:NP_001262263.1 Gene:atms / 40593 FlyBaseID:FBgn0010750 Length:538 Species:Drosophila melanogaster
Sequence 2:NP_062331.2 Gene:Paf1 / 54624 MGIID:1923988 Length:535 Species:Mus musculus


Alignment Length:544 Identity:273/544 - (50%)
Similarity:334/544 - (61%) Gaps:18/544 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPPTINNSAVNSAAEKRP--QRQTERKSEIICRVKYGNNLPDIPFDLKFLQYPFDSHRFVQYNPT 63
            |.|||...|...... ||  .|....:|.::|||||.|:|||||||.||:.||||.:|||||..|
Mouse     1 MAPTIQTQAQREDGH-RPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKAT 64

  Fly    64 SLERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLDPADEKLLEEETLTPTDSVRSRQHSRTVS 128
            |||:..|:|:|||.|||||:||||.:.|:.|...|||||||||||||...||.|.||:||::.|.
Mouse    65 SLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVP 129

  Fly   129 WLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLDREAQIKAIEKTFSDTKSEITKH 193
            |:||:||||||..|:...| |..|.|:|.:||:...||.:|.||::||.||||||.|.:..|::|
Mouse   130 WMRKTEYISTEFNRYGISN-EKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQH 193

  Fly   194 YSKPNVVPVEVLPIFPDFTNWKFPCAQVIFDSDPAPAGKNVPAQLEEMSQAMIRGVMDESGEQFV 258
            ||||.|.||||:|:||||..|..|||||||||||||...:..|.||.||||||||:|||.|.|||
Mouse   194 YSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFV 258

  Fly   259 AYFLPTEQTLEKRRTDFINGELYKEEEEYEYKIAREYNWNVKTKASKGYEENYFFVMRQ-DGIYY 322
            |||||.|:||:||:.|......|..::.|:||||||||||||.||||||||||||:.|: ||:||
Mouse   259 AYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYY 323

  Fly   323 NELETRVRLNKRRVKVG-QQPNNTKLVVKHRPLDSMEHRMQRYRERQLE--VPGEEEEIVEEVRE 384
            |||||||||:|||.|.| |...|..||||||.::..|...|..|:.|||  .|.||||...|..|
Mouse   324 NELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMEAEE 388

  Fly   385 EEQMQIIGETEKTSEDAAVGAQ-AASGADSPAQVARDRQSRSRSRTRSGSSSGSGSGSGSRASSR 448
            :|......|.||.|.....|:: ..||::|      ||:...|......|.||....|...|.:.
Mouse   389 KEAGGSDEEQEKGSSSEKEGSEDEHSGSES------DREEGDRDEASDKSGSGEDESSEDEARAA 447

  Fly   449 SKSGSRSGSGSRSRTNSPAGSQKSGSRSRSVSRSRSRSKSGSRSRSRSRSKSGSRSRSGSRSGSG 513
            .......||.:.|..::.:..:..|...|...........|...||||:|:|.|||.|...||| 
Mouse   448 RDKEEIFGSDADSEDDADSDDEDRGQAHRGSDNDSDSGSDGGGQRSRSQSRSRSRSASPFPSGS- 511

  Fly   514 SRSPSRSRSGSPSGSGSSSGSASD 537
              ..|....||.:.:..||.:.||
Mouse   512 --EHSAQEDGSEAAASDSSEADSD 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atmsNP_001262263.1 Paf1 27..414 CDD:281915 229/391 (59%)
Paf1NP_062331.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 8/22 (36%)
Paf1 30..443 CDD:397885 237/419 (57%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 361..535 55/182 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848244
Domainoid 1 1.000 438 1.000 Domainoid score I554
eggNOG 1 0.900 - - E1_KOG2478
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5441
Inparanoid 1 1.050 478 1.000 Inparanoid score I1456
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55946
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004172
OrthoInspector 1 1.000 - - oto92543
orthoMCL 1 0.900 - - OOG6_104057
Panther 1 1.100 - - LDO PTHR23188
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R886
SonicParanoid 1 1.000 - - X5214
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.790

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