DRSC/TRiP Functional Genomics Resources

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Protein Alignment atms and PAF1

DIOPT Version :9

Sequence 1:NP_001262263.1 Gene:atms / 40593 FlyBaseID:FBgn0010750 Length:538 Species:Drosophila melanogaster
Sequence 2:NP_061961.2 Gene:PAF1 / 54623 HGNCID:25459 Length:531 Species:Homo sapiens


Alignment Length:551 Identity:276/551 - (50%)
Similarity:341/551 - (61%) Gaps:43/551 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPPTINNSAVNSAAEKRP--QRQTERKSEIICRVKYGNNLPDIPFDLKFLQYPFDSHRFVQYNPT 63
            |.|||...|...... ||  .|....:|.::|||||.|:|||||||.||:.||||.:|||||..|
Human     1 MAPTIQTQAQREDGH-RPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKAT 64

  Fly    64 SLERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLDPADEKLLEEETLTPTDSVRSRQHSRTVS 128
            |||:..|:|:|||.|||||:||||.:.|:.|...|||||||||||||...||.|.||:||::.|.
Human    65 SLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVP 129

  Fly   129 WLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLDREAQIKAIEKTFSDTKSEITKH 193
            |:||:||||||..|:...| |..|.|:|.:||:...||.:|.||::||.||||||.|.:..|::|
Human   130 WMRKTEYISTEFNRYGISN-EKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQH 193

  Fly   194 YSKPNVVPVEVLPIFPDFTNWKFPCAQVIFDSDPAPAGKNVPAQLEEMSQAMIRGVMDESGEQFV 258
            ||||.|.||||:|:||||..|..|||||||||||||...:..|.||.||||||||:|||.|.|||
Human   194 YSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFV 258

  Fly   259 AYFLPTEQTLEKRRTDFINGELYKEEEEYEYKIAREYNWNVKTKASKGYEENYFFVMRQ-DGIYY 322
            |||||.|:||:||:.|......|..::.|:||||||||||||.||||||||||||:.|: ||:||
Human   259 AYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYY 323

  Fly   323 NELETRVRLNKRRVKVG-QQPNNTKLVVKHRPLDSMEHRMQRYRERQLEVPGEEEEIVEEVREEE 386
            |||||||||:|||.|.| |...|..||||||.::..|...|..|:.|||....|||      |||
Human   324 NELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEE------EEE 382

  Fly   387 QMQIIGETEKTSEDAAVGAQAASGADSPAQVARDRQSRSRSRTRSGS-SSGSGSGSGSRASSRSK 450
            :|    |||:         :.|.|:|       :.|.:..|..:.|| ...|||.|......|.:
Human   383 EM----ETEE---------KEAGGSD-------EEQEKGSSSEKEGSEDEHSGSESEREEGDRDE 427

  Fly   451 SGSRSGSGSRSRTNSPAGSQKSGSR-SRSVSRSRSRSKSGSRSRSRSRSKSGSRSRSGSRSGSGS 514
            :..:||||....:...|.:.:.... ..|.:.|...:.|....|.:::..|.:.|.||| :|.|.
Human   428 ASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGS-NGGGQ 491

  Fly   515 RSPSRSRSGSPSGSGS--------SSGSASD 537
            ||.|.|||.||..|||        |..:|||
Human   492 RSRSHSRSASPFPSGSEHSAQEDGSEAAASD 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atmsNP_001262263.1 Paf1 27..414 CDD:281915 227/388 (59%)
PAF1NP_061961.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 8/22 (36%)
Paf1 30..443 CDD:397885 240/439 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 361..531 58/189 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165157858
Domainoid 1 1.000 439 1.000 Domainoid score I558
eggNOG 1 0.900 - - E1_KOG2478
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5441
Inparanoid 1 1.050 473 1.000 Inparanoid score I1510
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55946
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004172
OrthoInspector 1 1.000 - - oto88977
orthoMCL 1 0.900 - - OOG6_104057
Panther 1 1.100 - - LDO PTHR23188
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R886
SonicParanoid 1 1.000 - - X5214
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.790

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